Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QN218_RS10015 Genome accession   NZ_CP126534
Coordinates   1926470..1927249 (-) Length   259 a.a.
NCBI ID   WP_003238551.1    Uniprot ID   A0A9W5PD99
Organism   Bacillus inaquosorum strain BSY82     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1921470..1932249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS09985 fliH 1921485..1922237 (-) 753 WP_060398627.1 flagellar assembly protein FliH -
  QN218_RS09990 fliG 1922230..1923246 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QN218_RS09995 fliF 1923259..1924869 (-) 1611 WP_080429004.1 flagellar basal-body MS-ring/collar protein FliF -
  QN218_RS10000 fliE 1924915..1925235 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QN218_RS10005 flgC 1925247..1925699 (-) 453 WP_003238546.1 flagellar basal body rod protein FlgC -
  QN218_RS10010 flgB 1925699..1926088 (-) 390 WP_060398625.1 flagellar basal body rod protein FlgB -
  QN218_RS10015 codY 1926470..1927249 (-) 780 WP_003238551.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QN218_RS10020 hslU 1927289..1928692 (-) 1404 WP_019258392.1 HslU--HslV peptidase ATPase subunit -
  QN218_RS10025 clpQ 1928709..1929254 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  QN218_RS10030 xerC 1929267..1930181 (-) 915 WP_060398624.1 tyrosine recombinase XerC -
  QN218_RS10035 trmFO 1930249..1931556 (-) 1308 WP_060398623.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29036.26 Da        Isoelectric Point: 4.7210

>NTDB_id=838561 QN218_RS10015 WP_003238551.1 1926470..1927249(-) (codY) [Bacillus inaquosorum strain BSY82]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=838561 QN218_RS10015 WP_003238551.1 1926470..1927249(-) (codY) [Bacillus inaquosorum strain BSY82]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCAGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAATAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACCCTCATTCTTTCACGTTTACAGGATC
AATTTCATGATGATGATTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGCATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GCTCTGTGATTGTTAATGCACTCAGAAAGCTGGAAAGCGCCGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467