Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QPL78_RS08805 Genome accession   NZ_CP126530
Coordinates   1696471..1697250 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1691471..1702250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS08785 (QPL78_08785) trmFO 1692165..1693472 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QPL78_RS08790 (QPL78_08790) xerC 1693540..1694454 (+) 915 WP_268497684.1 tyrosine recombinase XerC -
  QPL78_RS08795 (QPL78_08795) clpQ 1694467..1695012 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  QPL78_RS08800 (QPL78_08800) hslU 1695020..1696432 (+) 1413 WP_255238337.1 HslU--HslV peptidase ATPase subunit -
  QPL78_RS08805 (QPL78_08805) codY 1696471..1697250 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QPL78_RS08810 (QPL78_08810) flgB 1697633..1698022 (+) 390 WP_284560627.1 flagellar basal body rod protein FlgB -
  QPL78_RS08815 (QPL78_08815) flgC 1698022..1698474 (+) 453 WP_284560628.1 flagellar basal body rod protein FlgC -
  QPL78_RS08820 (QPL78_08820) fliE 1698485..1698805 (+) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  QPL78_RS08825 (QPL78_08825) fliF 1698851..1700461 (+) 1611 WP_284560629.1 flagellar basal-body MS-ring/collar protein FliF -
  QPL78_RS08830 (QPL78_08830) fliG 1700474..1701490 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QPL78_RS08835 (QPL78_08835) fliH 1701483..1702235 (+) 753 WP_059335794.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=838480 QPL78_RS08805 WP_003220850.1 1696471..1697250(+) (codY) [Bacillus halotolerans strain Tehuacan_S4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=838480 QPL78_RS08805 WP_003220850.1 1696471..1697250(+) (codY) [Bacillus halotolerans strain Tehuacan_S4]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGAAAACTTCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGACATCAATAGTGAGTACACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATCAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAACCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467