Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QPL78_RS08775 Genome accession   NZ_CP126530
Coordinates   1688926..1689825 (+) Length   299 a.a.
NCBI ID   WP_059335799.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1683926..1694825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS08755 (QPL78_08755) - 1684595..1686325 (+) 1731 WP_284560625.1 hypothetical protein -
  QPL78_RS08760 (QPL78_08760) - 1686322..1686603 (+) 282 WP_284560626.1 FlhB-like flagellar biosynthesis protein -
  QPL78_RS08765 (QPL78_08765) sucC 1686777..1687934 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  QPL78_RS08770 (QPL78_08770) sucD 1687963..1688865 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  QPL78_RS08775 (QPL78_08775) dprA 1688926..1689825 (+) 900 WP_059335799.1 DNA-processing protein DprA Machinery gene
  QPL78_RS08780 (QPL78_08780) topA 1690014..1692089 (+) 2076 WP_044155905.1 type I DNA topoisomerase -
  QPL78_RS08785 (QPL78_08785) trmFO 1692165..1693472 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QPL78_RS08790 (QPL78_08790) xerC 1693540..1694454 (+) 915 WP_268497684.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33022.28 Da        Isoelectric Point: 9.3995

>NTDB_id=838479 QPL78_RS08775 WP_059335799.1 1688926..1689825(+) (dprA) [Bacillus halotolerans strain Tehuacan_S4]
MDQAAACLITCRINQLLPPSLLLKWWKADPSMSLTNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYHQQGINVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIRVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=838479 QPL78_RS08775 WP_059335799.1 1688926..1689825(+) (dprA) [Bacillus halotolerans strain Tehuacan_S4]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTACCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGACAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCTC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTTTCTGTATATCATCAGCAAGGCATTAATGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCTCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCTTATGGAATTCGGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGGTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.612

100

0.836