Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QPL84_RS21785 Genome accession   NZ_CP126525
Coordinates   4241549..4243870 (-) Length   773 a.a.
NCBI ID   WP_284558186.1    Uniprot ID   -
Organism   Bacillus toyonensis strain Puebla_S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4236549..4248870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL84_RS21755 (QPL84_21755) - 4236988..4237164 (-) 177 WP_001242605.1 hypothetical protein -
  QPL84_RS21760 (QPL84_21760) - 4237250..4237441 (-) 192 WP_001104578.1 hypothetical protein -
  QPL84_RS21765 (QPL84_21765) - 4237521..4237853 (-) 333 Protein_4242 YrdB family protein -
  QPL84_RS21770 (QPL84_21770) - 4238119..4238559 (-) 441 WP_070173791.1 D-tyrosyl-tRNA(Tyr) deacylase -
  QPL84_RS21775 (QPL84_21775) relA 4238577..4240760 (-) 2184 WP_001262805.1 GTP diphosphokinase -
  QPL84_RS21780 (QPL84_21780) - 4240971..4241483 (-) 513 WP_000346217.1 adenine phosphoribosyltransferase -
  QPL84_RS21785 (QPL84_21785) recJ 4241549..4243870 (-) 2322 WP_284558186.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QPL84_RS21790 (QPL84_21790) - 4243972..4244865 (-) 894 WP_000409731.1 cation diffusion facilitator family transporter -
  QPL84_RS21795 (QPL84_21795) secDF 4245030..4247294 (-) 2265 WP_001119096.1 protein translocase subunit SecDF -
  QPL84_RS21800 (QPL84_21800) - 4247577..4247861 (-) 285 WP_000890217.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 773 a.a.        Molecular weight: 87525.07 Da        Isoelectric Point: 5.1194

>NTDB_id=838433 QPL84_RS21785 WP_284558186.1 4241549..4243870(-) (recJ) [Bacillus toyonensis strain Puebla_S2]
MLQPKTRWKEKEYNEERVSELAKKLQLSPLVISLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPETLAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENKFPPEENKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANLAELPKEKITMVYFSEEVLNKFSLEDYKEHLVHASEVTHLDDQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLNQKSPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEQKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHK

Nucleotide


Download         Length: 2322 bp        

>NTDB_id=838433 QPL84_RS21785 WP_284558186.1 4241549..4243870(-) (recJ) [Bacillus toyonensis strain Puebla_S2]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGAAGAGCGAGTGAGTGAATTAGCAAAAAAGTTACAACT
ATCACCACTTGTCATTTCGTTATTCCTCGGTAGAGGATTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCACGATCCGTTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGATTATGATGCGGACGGAGTAAGTAGTACAACGGTTTTATATCTTGCTCTGCAAGAATT
AGGTGCAGAGGTAGAATTTTATATTCCAAACCGTTTTACAGAAGGTTATGGACCGAACGAAGAAGCGTTTCGTTGGGCGC
ATAGTGCAGGGTTCTCACTTATTATTACTGTCGATACTGGTATCGCAGCGGTACATGAAGCGAAGGTAGCGAAGGAACTT
GGAATAGATCTTATTATTACGGATCACCATGAGCCACCGCCAGAATTACCAGAAACACTCGCGATTATTCATCCAAAACT
AGATGGCGGTGTGTATCCGTTTCATTATTTAGCCGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCACTATTAGGTCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATCGGTACGGTAGCCGATTTAGTATCACTTCATGGCGAAAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGAATGACGAAAAATATTGGTTTAAAGGCATTGTTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAAAGCATTGGATTCTCAATCGCACCGCGTATTAATGCAGTTGGGCGTTTAGAAGATGCTACGC
CGGCTGTACACCTATTATTATCAGATGACCCAGAGGAAGCGAAAGAACTGGCTGAAGAAATTGATGAGCTGAACAAACTT
CGAAAAGATATTGTAAAGCAAATTACAGAAGAGGCTATCGCTGAAGTGGAAAATAAATTCCCGCCAGAAGAAAATAAAGT
GTTAGTGCTTGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CAACAATTGTATTAAGCATTGATCCTGTCAAAGAAACAGCAAAGGGTTCAGCACGTAGTATCGCGGGATTTGATTTGTTT
GCAAACTTGTCGGATTGTAGAGAGTTATTACCGCACTTCGGAGGGCATCCGATGGCCGCAGGAATGACGCTACATATGAA
TGATGTAGATGAGTTACGTCGCCGCTTAAATGCGCAAGCGGATGCAATTTTAACAGAAGCGGATTTTATTCCAATCACAG
CAGTTGATACATTTTGTAAAGTGGAAGATGTAACGCTTGCAGCAATTGAGGATATGCAAAAGTTAGCGCCATTTGGTGTT
GGAAATCCGAAACCACGTCTTGCAGTGAAAAATGCTGAATTAGAAAGTATTCGTGCAATCGGATCAGATGGTTCACATTT
GAAAATGGCACTTCGTGACGGACAGGCAACACTGGATACAATTGGATTCGGATTTGGTGCGTATGCAAAAGAAATTTCTC
CAGTTGCTAAGGTATCTGTAATAGGAGAGGCATCCATTAATGAATGGAATAATTTTAAGAAGCCACAATTAATGGTACAA
GATATTGCTGTAGAGGCATGGCAATTATTTGATTGGCGTAGTATGCGTAATGTGGAAGCAAATTTAGCAGAACTTCCGAA
AGAAAAAATAACAATGGTGTATTTTTCTGAAGAGGTATTGAATAAGTTTTCTTTAGAAGACTATAAAGAACATCTTGTGC
ATGCATCAGAGGTAACTCATTTAGATGATCAATACATCGTGTTACTCGATTTGCCAAAAGGAACAGATGAATTGCGTGAT
TTATTTAAAGTAGGATTCCCATCTAGAATCTATACGTTATTTTATCAAGAGAACAATCATCTATTTAGTACAGTCCCAAC
GAGGGAACATTTTAAATGGTACTATTCTTTCTTAAACCAAAAATCACCATTTTCTTTAAGACAATATGGGGAACAACTAT
GTCGCCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCCGAACAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAT
AA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.584

100

0.527