Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | QPL84_RS18740 | Genome accession | NZ_CP126525 |
| Coordinates | 3684831..3685610 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421291.1 | Uniprot ID | A0A1V6LJD3 |
| Organism | Bacillus toyonensis strain Puebla_S2 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3659541..3721349 | 3684831..3685610 | within | 0 |
Gene organization within MGE regions
Location: 3659541..3721349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QPL84_RS18630 (QPL84_18630) | - | 3660111..3661010 (-) | 900 | WP_000868234.1 | polysaccharide deacetylase family protein | - |
| QPL84_RS18635 (QPL84_18635) | pnp | 3661162..3663300 (-) | 2139 | WP_000076735.1 | polyribonucleotide nucleotidyltransferase | - |
| QPL84_RS18640 (QPL84_18640) | rpsO | 3663461..3663730 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| QPL84_RS18645 (QPL84_18645) | ribF | 3663831..3664802 (-) | 972 | WP_000766714.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| QPL84_RS18650 (QPL84_18650) | truB | 3664846..3665769 (-) | 924 | WP_000399334.1 | tRNA pseudouridine(55) synthase TruB | - |
| QPL84_RS18655 (QPL84_18655) | rbfA | 3665855..3666211 (-) | 357 | WP_000776439.1 | 30S ribosome-binding factor RbfA | - |
| QPL84_RS18660 (QPL84_18660) | - | 3666227..3666508 (-) | 282 | WP_000582364.1 | DUF503 family protein | - |
| QPL84_RS18665 (QPL84_18665) | infB | 3666505..3668565 (-) | 2061 | WP_000036352.1 | translation initiation factor IF-2 | - |
| QPL84_RS18670 (QPL84_18670) | - | 3668570..3668881 (-) | 312 | WP_001286525.1 | YlxQ family RNA-binding protein | - |
| QPL84_RS18675 (QPL84_18675) | - | 3668882..3669154 (-) | 273 | WP_000071127.1 | YlxR family protein | - |
| QPL84_RS18680 (QPL84_18680) | nusA | 3669166..3670272 (-) | 1107 | WP_000102596.1 | transcription termination factor NusA | - |
| QPL84_RS18685 (QPL84_18685) | rimP | 3670290..3670760 (-) | 471 | WP_000359095.1 | ribosome maturation factor RimP | - |
| QPL84_RS18690 (QPL84_18690) | - | 3671094..3675395 (-) | 4302 | WP_000060011.1 | PolC-type DNA polymerase III | - |
| QPL84_RS18695 (QPL84_18695) | - | 3675520..3677220 (-) | 1701 | WP_000814325.1 | proline--tRNA ligase | - |
| QPL84_RS18700 (QPL84_18700) | rseP | 3677330..3678586 (-) | 1257 | WP_001090232.1 | RIP metalloprotease RseP | - |
| QPL84_RS18705 (QPL84_18705) | dxr | 3678604..3679746 (-) | 1143 | WP_000790354.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| QPL84_RS18710 (QPL84_18710) | cdsA | 3679770..3680561 (-) | 792 | WP_000813595.1 | phosphatidate cytidylyltransferase | - |
| QPL84_RS18715 (QPL84_18715) | uppS | 3680579..3681355 (-) | 777 | WP_000971308.1 | isoprenyl transferase | - |
| QPL84_RS18720 (QPL84_18720) | frr | 3681441..3681998 (-) | 558 | WP_000531505.1 | ribosome recycling factor | - |
| QPL84_RS18725 (QPL84_18725) | pyrH | 3682001..3682723 (-) | 723 | WP_000042662.1 | UMP kinase | - |
| QPL84_RS18730 (QPL84_18730) | tsf | 3682790..3683677 (-) | 888 | WP_001018579.1 | translation elongation factor Ts | - |
| QPL84_RS18735 (QPL84_18735) | rpsB | 3683781..3684482 (-) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| QPL84_RS18740 (QPL84_18740) | codY | 3684831..3685610 (-) | 780 | WP_000421291.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| QPL84_RS18745 (QPL84_18745) | hslU | 3685688..3687079 (-) | 1392 | WP_000550076.1 | ATP-dependent protease ATPase subunit HslU | - |
| QPL84_RS18750 (QPL84_18750) | hslV | 3687102..3687644 (-) | 543 | WP_000526274.1 | ATP-dependent protease proteolytic subunit HslV | - |
| QPL84_RS18755 (QPL84_18755) | xerC | 3687687..3688586 (-) | 900 | WP_001101240.1 | tyrosine recombinase XerC | - |
| QPL84_RS18760 (QPL84_18760) | trmFO | 3688652..3689956 (-) | 1305 | WP_000212000.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| QPL84_RS18765 (QPL84_18765) | topA | 3690005..3692083 (-) | 2079 | WP_001286961.1 | type I DNA topoisomerase | - |
| QPL84_RS18770 (QPL84_18770) | dprA | 3692228..3693097 (-) | 870 | WP_000818051.1 | DNA-processing protein DprA | - |
| QPL84_RS18775 (QPL84_18775) | sucD | 3693186..3694088 (-) | 903 | WP_000115185.1 | succinate--CoA ligase subunit alpha | - |
| QPL84_RS18780 (QPL84_18780) | sucC | 3694108..3695268 (-) | 1161 | WP_001020779.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| QPL84_RS18785 (QPL84_18785) | - | 3695463..3696236 (-) | 774 | WP_001171132.1 | ribonuclease HII | - |
| QPL84_RS18790 (QPL84_18790) | ylqF | 3696293..3697183 (-) | 891 | WP_000236689.1 | ribosome biogenesis GTPase YlqF | - |
| QPL84_RS18795 (QPL84_18795) | lepB | 3697204..3697755 (-) | 552 | WP_185777787.1 | signal peptidase I | - |
| QPL84_RS18800 (QPL84_18800) | rplS | 3697857..3698201 (-) | 345 | WP_001186517.1 | 50S ribosomal protein L19 | - |
| QPL84_RS18805 (QPL84_18805) | trmD | 3698348..3699082 (-) | 735 | WP_000686907.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| QPL84_RS18810 (QPL84_18810) | rimM | 3699082..3699597 (-) | 516 | WP_000170280.1 | ribosome maturation factor RimM | - |
| QPL84_RS18815 (QPL84_18815) | - | 3699719..3699946 (-) | 228 | WP_000737399.1 | KH domain-containing protein | - |
| QPL84_RS18820 (QPL84_18820) | rpsP | 3699961..3700233 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| QPL84_RS18825 (QPL84_18825) | ffh | 3700335..3701684 (-) | 1350 | WP_000863463.1 | signal recognition particle protein | - |
| QPL84_RS18830 (QPL84_18830) | - | 3701697..3702029 (-) | 333 | WP_000891061.1 | putative DNA-binding protein | - |
| QPL84_RS18835 (QPL84_18835) | ftsY | 3702163..3703152 (-) | 990 | WP_000007643.1 | signal recognition particle-docking protein FtsY | - |
| QPL84_RS18840 (QPL84_18840) | smc | 3703167..3706736 (-) | 3570 | WP_000479010.1 | chromosome segregation protein SMC | - |
| QPL84_RS18845 (QPL84_18845) | rncS | 3706883..3707620 (-) | 738 | WP_001146877.1 | ribonuclease III | - |
| QPL84_RS18850 (QPL84_18850) | acpP | 3707680..3707913 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| QPL84_RS18855 (QPL84_18855) | fabG | 3707983..3708723 (-) | 741 | WP_000911780.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| QPL84_RS18860 (QPL84_18860) | fabD | 3708723..3709667 (-) | 945 | WP_061529569.1 | ACP S-malonyltransferase | - |
| QPL84_RS18865 (QPL84_18865) | plsX | 3709682..3710674 (-) | 993 | WP_000684090.1 | phosphate acyltransferase PlsX | - |
| QPL84_RS18870 (QPL84_18870) | fapR | 3710671..3711264 (-) | 594 | WP_284558129.1 | transcription factor FapR | - |
| QPL84_RS18875 (QPL84_18875) | recG | 3711353..3713401 (-) | 2049 | WP_098684472.1 | ATP-dependent DNA helicase RecG | - |
| QPL84_RS18880 (QPL84_18880) | - | 3713691..3715367 (-) | 1677 | WP_000027119.1 | DAK2 domain-containing protein | - |
| QPL84_RS18885 (QPL84_18885) | - | 3715390..3715752 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| QPL84_RS18890 (QPL84_18890) | rpmB | 3716129..3716317 (+) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| QPL84_RS18895 (QPL84_18895) | spoVM | 3716391..3716471 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| QPL84_RS18900 (QPL84_18900) | - | 3716538..3717218 (-) | 681 | WP_002039429.1 | thiamine diphosphokinase | - |
| QPL84_RS18905 (QPL84_18905) | rpe | 3717319..3717963 (-) | 645 | WP_097837482.1 | ribulose-phosphate 3-epimerase | - |
| QPL84_RS18910 (QPL84_18910) | rsgA | 3717966..3718847 (-) | 882 | WP_001113944.1 | ribosome small subunit-dependent GTPase A | - |
| QPL84_RS18915 (QPL84_18915) | prkC | 3719117..3721090 (-) | 1974 | WP_000904738.1 | serine/threonine protein kinase PrkC | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28788.03 Da Isoelectric Point: 4.7947
>NTDB_id=838424 QPL84_RS18740 WP_000421291.1 3684831..3685610(-) (codY) [Bacillus toyonensis strain Puebla_S2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=838424 QPL84_RS18740 WP_000421291.1 3684831..3685610(-) (codY) [Bacillus toyonensis strain Puebla_S2]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGATACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAACGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAATATACGCAAAGCTTATTC
AATGTAACGGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAGTTAAACGGAACAGAAGGTCTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATCACTC
GTTCTGTGATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATCGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTTTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGATACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAACGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAATATACGCAAAGCTTATTC
AATGTAACGGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAGTTAAACGGAACAGAAGGTCTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATCACTC
GTTCTGTGATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATCGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTTTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.853 |
100 |
0.819 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |