Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VB103_RS01950 Genome accession   NZ_CP141840
Coordinates   416832..417464 (-) Length   210 a.a.
NCBI ID   WP_000242750.1    Uniprot ID   -
Organism   Escherichia coli strain LA3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 411832..422464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB103_RS01925 (VB103_01925) yhfG 411964..412131 (+) 168 WP_000736860.1 YhfG family protein -
  VB103_RS01930 (VB103_01930) fic 412121..412723 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  VB103_RS01935 (VB103_01935) pabA 412755..413318 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  VB103_RS01940 (VB103_01940) argD 413404..414624 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  VB103_RS01945 (VB103_01945) yhfK 414691..416781 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  VB103_RS01950 (VB103_01950) crp 416832..417464 (-) 633 WP_000242750.1 cAMP-activated global transcriptional regulator CRP Regulator
  VB103_RS01955 (VB103_01955) yhfA 417766..418170 (+) 405 WP_001148908.1 OsmC family protein -
  VB103_RS01960 (VB103_01960) prkB 418225..419094 (-) 870 WP_001275838.1 phosphoribulokinase -
  VB103_RS01965 (VB103_01965) yheU 419148..419366 (-) 219 WP_000907085.1 YheU family protein -
  VB103_RS01970 (VB103_01970) yheT 419360..420382 (-) 1023 WP_000057405.1 hydrolase -
  VB103_RS01975 (VB103_01975) yheS 420382..422295 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23698.46 Da        Isoelectric Point: 7.8363

>NTDB_id=838424 VB103_RS01950 WP_000242750.1 416832..417464(-) (crp) [Escherichia coli strain LA3]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=838424 VB103_RS01950 WP_000242750.1 416832..417464(-) (crp) [Escherichia coli strain LA3]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGAC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

77.451

97.143

0.752
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467