Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   VDS57_RS16300 Genome accession   NZ_CP141839
Coordinates   3073460..3074377 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain PN1236     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3068460..3079377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS16285 (VDS57_16285) trpS 3069040..3070032 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  VDS57_RS16290 (VDS57_16290) oppA 3070776..3072413 (+) 1638 WP_324271333.1 oligopeptide ABC transporter substrate-binding protein OppA -
  VDS57_RS16295 (VDS57_16295) oppB 3072521..3073456 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  VDS57_RS16300 (VDS57_16300) amiD 3073460..3074377 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  VDS57_RS16305 (VDS57_16305) oppD 3074382..3075458 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  VDS57_RS16310 (VDS57_16310) oppF 3075460..3076377 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  VDS57_RS16315 (VDS57_16315) yjbB 3076485..3077702 (+) 1218 WP_072592593.1 MFS transporter -
  VDS57_RS16320 (VDS57_16320) yjbC 3077866..3078444 (+) 579 Protein_3146 GNAT family N-acetyltransferase -
  VDS57_RS16325 (VDS57_16325) spx 3078625..3079020 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=838377 VDS57_RS16300 WP_003232954.1 3073460..3074377(+) (amiD) [Bacillus subtilis strain PN1236]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=838377 VDS57_RS16300 WP_003232954.1 3073460..3074377(+) (amiD) [Bacillus subtilis strain PN1236]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364