Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QPL83_RS20710 Genome accession   NZ_CP126524
Coordinates   3751188..3751967 (-) Length   259 a.a.
NCBI ID   WP_000421291.1    Uniprot ID   A0A1V6LJD3
Organism   Bacillus toyonensis strain Monterrey_S3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3746188..3756967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL83_RS20685 (QPL83_20685) uppS 3746937..3747713 (-) 777 WP_000971308.1 isoprenyl transferase -
  QPL83_RS20690 (QPL83_20690) frr 3747799..3748356 (-) 558 WP_000531505.1 ribosome recycling factor -
  QPL83_RS20695 (QPL83_20695) pyrH 3748359..3749081 (-) 723 WP_000042662.1 UMP kinase -
  QPL83_RS20700 (QPL83_20700) tsf 3749148..3750035 (-) 888 WP_001018579.1 translation elongation factor Ts -
  QPL83_RS20705 (QPL83_20705) rpsB 3750139..3750840 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  QPL83_RS20710 (QPL83_20710) codY 3751188..3751967 (-) 780 WP_000421291.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QPL83_RS20715 (QPL83_20715) hslU 3752045..3753436 (-) 1392 WP_000550076.1 ATP-dependent protease ATPase subunit HslU -
  QPL83_RS20720 (QPL83_20720) hslV 3753459..3754001 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  QPL83_RS20725 (QPL83_20725) xerC 3754044..3754943 (-) 900 WP_001101240.1 tyrosine recombinase XerC -
  QPL83_RS20730 (QPL83_20730) trmFO 3755009..3756313 (-) 1305 WP_000212000.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28788.03 Da        Isoelectric Point: 4.7947

>NTDB_id=838375 QPL83_RS20710 WP_000421291.1 3751188..3751967(-) (codY) [Bacillus toyonensis strain Monterrey_S3]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=838375 QPL83_RS20710 WP_000421291.1 3751188..3751967(-) (codY) [Bacillus toyonensis strain Monterrey_S3]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGATACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAACGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAATATACGCAAAGCTTATTC
AATGTAACGGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAGTTAAACGGAACAGAAGGTCTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATCACTC
GTTCTGTGATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATCGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTTTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V6LJD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.853

100

0.819
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456