Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   VDS57_RS14225 Genome accession   NZ_CP141839
Coordinates   2678751..2679467 (+) Length   238 a.a.
NCBI ID   WP_258996546.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2673751..2684467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS14195 (VDS57_14195) - 2674253..2674390 (+) 138 WP_072592513.1 hypothetical protein -
  VDS57_RS14200 (VDS57_14200) yflB 2674409..2674801 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  VDS57_RS14205 (VDS57_14205) - 2674926..2675130 (+) 205 Protein_2742 sodium:alanine symporter family protein -
  VDS57_RS14210 (VDS57_14210) - 2675126..2675455 (-) 330 Protein_2743 spore germination protein -
  VDS57_RS14215 (VDS57_14215) treP 2675562..2676974 (+) 1413 WP_014479163.1 PTS system trehalose-specific EIIBC component -
  VDS57_RS14220 (VDS57_14220) treC 2677045..2678730 (+) 1686 WP_324271357.1 alpha,alpha-phosphotrehalase -
  VDS57_RS14225 (VDS57_14225) treR 2678751..2679467 (+) 717 WP_258996546.1 trehalose operon repressor Regulator
  VDS57_RS14230 (VDS57_14230) hypO 2679607..2680272 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.87 Da        Isoelectric Point: 7.5090

>NTDB_id=838358 VDS57_RS14225 WP_258996546.1 2678751..2679467(+) (treR) [Bacillus subtilis strain PN1236]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELARTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=838358 VDS57_RS14225 WP_258996546.1 2678751..2679467(+) (treR) [Bacillus subtilis strain PN1236]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCGAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416