Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QPL77_RS07750 Genome accession   NZ_CP126521
Coordinates   1564012..1564791 (+) Length   259 a.a.
NCBI ID   WP_144521404.1    Uniprot ID   -
Organism   Bacillus pumilus strain Monterrey_S2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559012..1569791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS07730 (QPL77_07730) trmFO 1559716..1561020 (+) 1305 WP_211063841.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QPL77_RS07735 (QPL77_07735) xerC 1561083..1562000 (+) 918 WP_144521400.1 tyrosine recombinase XerC -
  QPL77_RS07740 (QPL77_07740) hslV 1562015..1562560 (+) 546 WP_144521402.1 ATP-dependent protease subunit HslV -
  QPL77_RS07745 (QPL77_07745) hslU 1562577..1563977 (+) 1401 WP_012009950.1 HslU--HslV peptidase ATPase subunit -
  QPL77_RS07750 (QPL77_07750) codY 1564012..1564791 (+) 780 WP_144521404.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QPL77_RS07755 (QPL77_07755) flgB 1565078..1565467 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  QPL77_RS07760 (QPL77_07760) flgC 1565467..1565919 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  QPL77_RS07765 (QPL77_07765) fliE 1565931..1566248 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  QPL77_RS07770 (QPL77_07770) fliF 1566298..1567890 (+) 1593 WP_144521406.1 flagellar basal-body MS-ring/collar protein FliF -
  QPL77_RS07775 (QPL77_07775) fliG 1567902..1568918 (+) 1017 WP_034317753.1 flagellar motor switch protein FliG -
  QPL77_RS07780 (QPL77_07780) fliH 1568911..1569675 (+) 765 WP_211063840.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29030.29 Da        Isoelectric Point: 4.6614

>NTDB_id=838313 QPL77_RS07750 WP_144521404.1 1564012..1564791(+) (codY) [Bacillus pumilus strain Monterrey_S2]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTVVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=838313 QPL77_RS07750 WP_144521404.1 1564012..1564791(+) (codY) [Bacillus pumilus strain Monterrey_S2]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTTCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCGTTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGACGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCAATTAGTTCTCTATCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAGCTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATTACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCACGCTCTCTTGGAATGAAGGGAACA
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471