Detailed information NTG0838252

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: VA212_RS04465
• Genome accession: NZ_CP141838
• Coordinates: 926992..928167 (+)
• Length: 391 a.a.
• NCBI ID: WP_324659451.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P07928
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 921992..933167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA212_RS04440	-	922237..923133 (+)	897	WP_000697547.1	OriC activity response regulator	-
VA212_RS04445	-	923358..924224 (+)	867	WP_324661431.1	5'-3' exonuclease	-
VA212_RS04450	-	924330..925580 (-)	1251	WP_324659448.1	hypothetical protein	-
VA212_RS04455	-	925748..926614 (+)	867	WP_324659449.1	DnaJ C-terminal domain-containing protein	-
VA212_RS04460	-	926624..926995 (+)	372	WP_024116574.1	heat shock protein transcriptional repressor HspR	-
VA212_RS04465	rarA	926992..928167 (+)	1176	WP_324659451.1	replication-associated recombination protein A	Machinery gene
VA212_RS04470	fur	928327..928779 (+)	453	WP_324659452.1	ferric iron uptake transcriptional regulator	-
VA212_RS04475	-	928799..929296 (-)	498	WP_180636051.1	DUF2147 domain-containing protein	-
VA212_RS04480	-	929293..929829 (-)	537	WP_128480034.1	YhcH/YjgK/YiaL family protein	-
VA212_RS04485	fliY	929857..930720 (-)	864	WP_324659456.1	flagellar motor switch protein FliY	-
VA212_RS04490	fliM	930724..931788 (-)	1065	WP_324659458.1	flagellar motor switch protein FliM	-
VA212_RS04495	-	931781..932557 (-)	777	WP_000602378.1	RNA polymerase sigma factor FliA	-
VA212_RS04500	-	932535..932849 (-)	315	WP_000867999.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43860.48 Da
• Isoelectric Point: 7.4470

>NTDB_id=838252 VA212_RS04465 WP_324659451.1 926992..928167(+) (rarA) [Helicobacter pylori strain P07928]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPPAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLACLIASGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=838252 VA212_RS04465 WP_324659451.1 926992..928167(+) (rarA) [Helicobacter pylori strain P07928]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCCTGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAGCTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCATGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCTTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGTGCTTGATTGCTAGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATCTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	36.893	100	0.389