Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QN340_RS12335 Genome accession   NZ_CP126496
Coordinates   2474598..2475377 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain DY4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2469598..2480377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN340_RS12315 (QN340_12315) trmFO 2470295..2471599 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QN340_RS12320 (QN340_12320) xerC 2471666..2472580 (+) 915 WP_020451383.1 tyrosine recombinase XerC -
  QN340_RS12325 (QN340_12325) hslV 2472594..2473139 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  QN340_RS12330 (QN340_12330) hslU 2473147..2474559 (+) 1413 WP_256163786.1 HslU--HslV peptidase ATPase subunit -
  QN340_RS12335 (QN340_12335) codY 2474598..2475377 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QN340_RS12340 (QN340_12340) flgB 2475729..2476118 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  QN340_RS12345 (QN340_12345) flgC 2476118..2476570 (+) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  QN340_RS12350 (QN340_12350) fliE 2476584..2476901 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  QN340_RS12355 (QN340_12355) fliF 2476952..2478553 (+) 1602 Protein_2392 flagellar basal-body MS-ring/collar protein FliF -
  QN340_RS12360 (QN340_12360) fliG 2478567..2479583 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  QN340_RS12365 (QN340_12365) fliH 2479567..2480334 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=838159 QN340_RS12335 WP_003181756.1 2474598..2475377(+) (codY) [Bacillus paralicheniformis strain DY4]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=838159 QN340_RS12335 WP_003181756.1 2474598..2475377(+) (codY) [Bacillus paralicheniformis strain DY4]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467