Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QOM09_RS19285 Genome accession   NZ_CP126474
Coordinates   3772135..3772914 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain DHC4     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3756689..3811752 3772135..3772914 within 0


Gene organization within MGE regions


Location: 3756689..3811752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM09_RS19230 (QOM09_19230) rimP 3757591..3758061 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  QOM09_RS19235 (QOM09_19235) - 3758398..3762699 (-) 4302 WP_053512442.1 PolC-type DNA polymerase III -
  QOM09_RS19240 (QOM09_19240) - 3762824..3764524 (-) 1701 WP_000814333.1 proline--tRNA ligase -
  QOM09_RS19245 (QOM09_19245) rseP 3764634..3765890 (-) 1257 WP_001090245.1 RIP metalloprotease RseP -
  QOM09_RS19250 (QOM09_19250) dxr 3765908..3767050 (-) 1143 WP_000790372.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QOM09_RS19255 (QOM09_19255) cdsA 3767074..3767865 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  QOM09_RS19260 (QOM09_19260) uppS 3767883..3768659 (-) 777 WP_000971296.1 isoprenyl transferase -
  QOM09_RS19265 (QOM09_19265) frr 3768745..3769302 (-) 558 WP_000531501.1 ribosome recycling factor -
  QOM09_RS19270 (QOM09_19270) pyrH 3769305..3770027 (-) 723 WP_000042668.1 UMP kinase -
  QOM09_RS19275 (QOM09_19275) tsf 3770094..3770981 (-) 888 WP_001018578.1 translation elongation factor Ts -
  QOM09_RS19280 (QOM09_19280) rpsB 3771085..3771786 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  QOM09_RS19285 (QOM09_19285) codY 3772135..3772914 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QOM09_RS19290 (QOM09_19290) hslU 3772992..3774383 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  QOM09_RS19295 (QOM09_19295) hslV 3774406..3774948 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  QOM09_RS19300 (QOM09_19300) xerC 3774991..3775890 (-) 900 WP_001101241.1 tyrosine recombinase XerC -
  QOM09_RS19305 (QOM09_19305) trmFO 3775956..3777260 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QOM09_RS19310 (QOM09_19310) topA 3777309..3779387 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  QOM09_RS19315 (QOM09_19315) dprA 3779532..3780401 (-) 870 WP_000818039.1 DNA-processing protein DprA -
  QOM09_RS19320 (QOM09_19320) sucD 3780489..3781391 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  QOM09_RS19325 (QOM09_19325) sucC 3781411..3782571 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  QOM09_RS19330 (QOM09_19330) - 3782766..3783539 (-) 774 WP_053512441.1 ribonuclease HII -
  QOM09_RS19335 (QOM09_19335) ylqF 3783596..3784486 (-) 891 WP_053512440.1 ribosome biogenesis GTPase YlqF -
  QOM09_RS19340 (QOM09_19340) lepB 3784507..3785058 (-) 552 WP_000711851.1 signal peptidase I -
  QOM09_RS19345 (QOM09_19345) rplS 3785160..3785504 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  QOM09_RS19350 (QOM09_19350) trmD 3785651..3786385 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QOM09_RS19355 (QOM09_19355) rimM 3786385..3786900 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  QOM09_RS19360 (QOM09_19360) - 3787021..3787248 (-) 228 WP_000737401.1 KH domain-containing protein -
  QOM09_RS19365 (QOM09_19365) rpsP 3787263..3787535 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  QOM09_RS19370 (QOM09_19370) ffh 3787636..3788985 (-) 1350 WP_000863460.1 signal recognition particle protein -
  QOM09_RS19375 (QOM09_19375) - 3788998..3789330 (-) 333 WP_000891062.1 putative DNA-binding protein -
  QOM09_RS19380 (QOM09_19380) ftsY 3789464..3790453 (-) 990 WP_053512439.1 signal recognition particle-docking protein FtsY -
  QOM09_RS19385 (QOM09_19385) smc 3790469..3794038 (-) 3570 WP_284558958.1 chromosome segregation protein SMC -
  QOM09_RS19390 (QOM09_19390) rncS 3794185..3794922 (-) 738 WP_001146875.1 ribonuclease III -
  QOM09_RS19395 (QOM09_19395) acpP 3794981..3795214 (-) 234 WP_000786062.1 acyl carrier protein -
  QOM09_RS19400 (QOM09_19400) fabG 3795284..3796024 (-) 741 WP_000911768.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QOM09_RS19405 (QOM09_19405) fabD 3796024..3796968 (-) 945 WP_000515910.1 ACP S-malonyltransferase -
  QOM09_RS19410 (QOM09_19410) plsX 3796983..3797975 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  QOM09_RS19415 (QOM09_19415) fapR 3797972..3798565 (-) 594 WP_000747349.1 transcription factor FapR -
  QOM09_RS19420 (QOM09_19420) recG 3798653..3800701 (-) 2049 WP_001000813.1 ATP-dependent DNA helicase RecG -
  QOM09_RS19425 (QOM09_19425) - 3800992..3802668 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  QOM09_RS19430 (QOM09_19430) - 3802691..3803053 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  QOM09_RS19435 (QOM09_19435) rpmB 3803430..3803618 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  QOM09_RS19440 (QOM09_19440) spoVM 3803692..3803772 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  QOM09_RS19445 (QOM09_19445) - 3803839..3804519 (-) 681 WP_000752663.1 thiamine diphosphokinase -
  QOM09_RS19450 (QOM09_19450) rpe 3804589..3805233 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  QOM09_RS19455 (QOM09_19455) rsgA 3805236..3806117 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  QOM09_RS19460 (QOM09_19460) pknB 3806364..3808337 (-) 1974 WP_000904748.1 Stk1 family PASTA domain-containing Ser/Thr kinase -
  QOM09_RS19465 (QOM09_19465) - 3808346..3809098 (-) 753 WP_000648703.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  QOM09_RS19470 (QOM09_19470) rlmN 3809103..3810191 (-) 1089 WP_000450541.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  QOM09_RS19475 (QOM09_19475) rsmB 3810196..3811530 (-) 1335 WP_001249668.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=838087 QOM09_RS19285 WP_000421290.1 3772135..3772914(-) (codY) [Bacillus thuringiensis strain DHC4]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=838087 QOM09_RS19285 WP_000421290.1 3772135..3772914(-) (codY) [Bacillus thuringiensis strain DHC4]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGTGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459