Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QMM94_RS08015 Genome accession   NZ_AP027134
Coordinates   1669205..1670479 (+) Length   424 a.a.
NCBI ID   WP_228587310.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1664205..1675479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM94_RS07985 (JP008_15600) mnmA 1664407..1665525 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  QMM94_RS07990 (JP008_15610) - 1665526..1666668 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  QMM94_RS07995 (JP008_15620) - 1666980..1667993 (+) 1014 WP_000985895.1 LLM class flavin-dependent oxidoreductase -
  QMM94_RS08000 (JP008_15630) - 1668230..1668376 (-) 147 WP_000009237.1 SAS049 family protein -
  QMM94_RS08005 (JP008_15640) - 1668416..1668598 (-) 183 WP_000752909.1 CsbD family protein -
  QMM94_RS08010 (JP008_15650) - 1668698..1669120 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  QMM94_RS08015 (JP008_15660) rarA 1669205..1670479 (+) 1275 WP_228587310.1 replication-associated recombination protein A Machinery gene
  QMM94_RS08020 (JP008_15670) - 1670640..1671413 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  QMM94_RS08025 - 1671413..1671541 (-) 129 WP_001790559.1 hypothetical protein -
  QMM94_RS08035 (JP008_15680) aspS 1671874..1673640 (-) 1767 WP_267815052.1 aspartate--tRNA ligase -
  QMM94_RS08040 (JP008_15690) hisS 1673656..1674918 (-) 1263 WP_117224392.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47236.78 Da        Isoelectric Point: 8.3539

>NTDB_id=83802 QMM94_RS08015 WP_228587310.1 1669205..1670479(+) (rarA) [Staphylococcus aureus strain JP008]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHAGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=83802 QMM94_RS08015 WP_228587310.1 1669205..1670479(+) (rarA) [Staphylococcus aureus strain JP008]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCCAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGCGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTTAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686

Multiple sequence alignment