Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QLQ03_RS16885 Genome accession   NZ_CP126456
Coordinates   3274484..3275263 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain KRS010     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3269484..3280263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS16865 trmFO 3270188..3271492 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QLQ03_RS16870 xerC 3271555..3272472 (+) 918 WP_284565074.1 tyrosine recombinase XerC -
  QLQ03_RS16875 hslV 3272487..3273032 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  QLQ03_RS16880 hslU 3273049..3274449 (+) 1401 WP_039166692.1 HslU--HslV peptidase ATPase subunit -
  QLQ03_RS16885 codY 3274484..3275263 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QLQ03_RS16890 flgB 3275552..3275941 (+) 390 WP_284565075.1 flagellar basal body rod protein FlgB -
  QLQ03_RS16895 flgC 3275941..3276393 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  QLQ03_RS16900 fliE 3276405..3276722 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  QLQ03_RS16905 fliF 3276773..3278365 (+) 1593 WP_081114479.1 flagellar basal-body MS-ring/collar protein FliF -
  QLQ03_RS16910 fliG 3278377..3279393 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  QLQ03_RS16915 fliH 3279386..3280150 (+) 765 WP_017359090.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=837929 QLQ03_RS16885 WP_007499612.1 3274484..3275263(+) (codY) [Bacillus altitudinis strain KRS010]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=837929 QLQ03_RS16885 WP_007499612.1 3274484..3275263(+) (codY) [Bacillus altitudinis strain KRS010]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAGGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAATGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471