Detailed information NTG0837862

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: VA243_RS01160
• Genome accession: NZ_CP141774
• Coordinates: 223673..224848 (-)
• Length: 391 a.a.
• NCBI ID: WP_324714802.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P07353
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 218673..229848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA243_RS01125	-	218989..219303 (+)	315	WP_000867999.1	hypothetical protein	-
VA243_RS01130	-	219281..220057 (+)	777	WP_187842353.1	RNA polymerase sigma factor FliA	-
VA243_RS01135	fliM	220050..221114 (+)	1065	WP_000763604.1	flagellar motor switch protein FliM	-
VA243_RS01140	fliY	221118..221981 (+)	864	WP_324714799.1	flagellar motor switch protein FliY	-
VA243_RS01145	-	222010..222546 (+)	537	WP_324714800.1	YhcH/YjgK/YiaL family protein	-
VA243_RS01150	-	222543..223040 (+)	498	WP_000780248.1	DUF2147 domain-containing protein	-
VA243_RS01155	fur	223060..223512 (-)	453	WP_324714801.1	ferric iron uptake transcriptional regulator	-
VA243_RS01160	rarA	223673..224848 (-)	1176	WP_324714802.1	replication-associated recombination protein A	Machinery gene
VA243_RS01165	-	224845..225216 (-)	372	WP_050833256.1	heat shock protein transcriptional repressor HspR	-
VA243_RS01170	-	225226..226092 (-)	867	WP_120933320.1	DnaJ C-terminal domain-containing protein	-
VA243_RS01175	-	226260..227510 (+)	1251	WP_324714803.1	hypothetical protein	-
VA243_RS01180	-	227532..228398 (-)	867	WP_080127562.1	5'-3' exonuclease	-
VA243_RS01185	-	228624..229520 (-)	897	WP_017280219.1	OriC activity response regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43964.67 Da
• Isoelectric Point: 8.3996

>NTDB_id=837862 VA243_RS01160 WP_324714802.1 223673..224848(-) (rarA) [Helicobacter pylori strain P07353]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCTK
ALILLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLNKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=837862 VA243_RS01160 WP_324714802.1 223673..224848(-) (rarA) [Helicobacter pylori strain P07353]
ATGAGCCTGACTTCACTTTTAAATCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAACTTTGCACTAAA
GCTTTAATATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTCGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATAAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCTATTAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATCTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTAATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	38.243	98.977	0.379