Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNI29_RS15005 Genome accession   NZ_CP126446
Coordinates   2872704..2875040 (-) Length   778 a.a.
NCBI ID   WP_354665909.1    Uniprot ID   -
Organism   Pontibacillus chungwhensis strain HN14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2867704..2880040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNI29_RS14985 (QNI29_14985) alaS 2867865..2870510 (-) 2646 WP_231417294.1 alanine--tRNA ligase -
  QNI29_RS14990 (QNI29_14990) - 2870890..2871957 (-) 1068 WP_231417295.1 AI-2E family transporter -
  QNI29_RS14995 (QNI29_14995) - 2872193..2872345 (-) 153 WP_084599619.1 YrzQ family protein -
  QNI29_RS15000 (QNI29_15000) - 2872370..2872558 (-) 189 WP_036785611.1 hypothetical protein -
  QNI29_RS15005 (QNI29_15005) recD2 2872704..2875040 (-) 2337 WP_354665909.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNI29_RS15010 (QNI29_15010) - 2875056..2875730 (-) 675 WP_354665910.1 tetratricopeptide repeat protein -
  QNI29_RS15015 (QNI29_15015) mnmA 2875889..2877001 (-) 1113 WP_231417296.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNI29_RS15020 (QNI29_15020) - 2877015..2878160 (-) 1146 WP_231417297.1 cysteine desulfurase family protein -
  QNI29_RS15025 (QNI29_15025) - 2878181..2878600 (-) 420 WP_188651362.1 Rrf2 family transcriptional regulator -
  QNI29_RS15030 (QNI29_15030) - 2878533..2879276 (-) 744 WP_231417298.1 YitT family protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 88332.51 Da        Isoelectric Point: 4.9727

>NTDB_id=837854 QNI29_RS15005 WP_354665909.1 2872704..2875040(-) (recD2) [Pontibacillus chungwhensis strain HN14]
MAMEKQLEENFEPEKGFIKGEPLRMIYHNDEEHFSIALVKVIETNEPFEEKEIVLKGHFSPLDQGEHYTFYGKVTNHPKF
GEQYHVEHYQKEVPTSKEGIVGYLSSDLFYGIGKRTAENIVGILGEQTISRILQDPSVLKQVPGLKQDKADRLVADLKQH
QGFEHIVIGLSQYGFGLQMAQKIYETYQDQALEILQEDPYQFVFDIQGFGFKRADEVASQNNIAFDHPTRIQAACMYALN
QGSSHGHVYMTFEALEEEVLSILQGSSGLITKEIISREIAQLVEDEKVLVEQEKVYLPSLFFAEAGFAKQMHRVMLSELE
EEFTQAELMKVVGEIEDEESISYGKEQFDAIEKALHSKTMILTGGPGTGKTTVIKGIVNAYAKLKRKSLKPADYGKDEPF
PFLLTAPTGRAAKRMNESTGLPAVTIHRLLGWTGGESFDKDQNNQLSGKILIIDEFSMVDIWLANQLFRAIPDDMQVLLV
GDEDQLPSVGPGQVLSDLLTTDYIPATQLKEVYRQKEGSQIIRLAHDMKKGKCDEESLAKSHDFSFITCPEPQVLPVIQQ
VYQKAMARGHTLKDIQILAPMYRAKNGIHQLNQEIQALANPPSRQRREIKMKDDLTYRSGDKVIQLVNQPESGVYNGDIG
EIVAIYRADETKEQKEKLVVSFEGKEVEYLRKDLNQLMHAYCTSIHKSQGSEFPIVILPVVRGYSRMLRRNLLYTAVTRS
KQSLIICGDQEAFKRGVDTVDTNRRFTDLPDKIKIYMEAEVKDEEDLDEEELSPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=837854 QNI29_RS15005 WP_354665909.1 2872704..2875040(-) (recD2) [Pontibacillus chungwhensis strain HN14]
ATGGCAATGGAGAAGCAATTAGAAGAAAATTTCGAACCCGAAAAAGGCTTCATCAAAGGGGAACCACTAAGAATGATTTA
CCATAATGATGAAGAACACTTTTCCATTGCACTGGTTAAAGTCATCGAGACCAATGAGCCTTTTGAGGAAAAAGAAATTG
TGTTAAAAGGCCATTTTTCACCATTAGACCAGGGAGAGCACTATACGTTTTATGGAAAGGTGACCAATCACCCGAAATTT
GGTGAACAGTACCACGTTGAGCATTACCAAAAAGAAGTGCCAACGAGTAAAGAAGGGATCGTTGGATACCTTTCTAGTGA
CCTATTTTATGGAATCGGGAAACGTACTGCTGAAAATATTGTTGGCATACTTGGGGAACAAACCATCAGCCGTATCCTGC
AAGACCCTTCCGTACTAAAACAAGTCCCAGGTCTGAAGCAAGATAAAGCGGACAGGTTAGTGGCAGATTTAAAGCAACAT
CAGGGATTTGAGCATATTGTAATTGGTTTGTCTCAATACGGCTTTGGATTGCAAATGGCTCAAAAAATTTATGAAACGTA
CCAAGACCAAGCGCTTGAAATTCTGCAGGAAGATCCTTATCAATTTGTATTTGATATTCAGGGTTTTGGTTTTAAACGCG
CCGATGAAGTGGCTTCACAGAATAATATTGCTTTTGATCACCCGACAAGAATTCAAGCAGCCTGTATGTACGCTTTAAAT
CAAGGGAGTAGTCATGGGCATGTCTATATGACTTTTGAAGCTTTAGAGGAAGAAGTGTTAAGCATATTACAAGGTTCATC
TGGCCTTATTACCAAAGAGATTATTTCCCGAGAAATAGCGCAACTTGTCGAAGATGAGAAAGTACTAGTGGAGCAGGAAA
AAGTTTATTTGCCATCGCTTTTCTTTGCAGAAGCCGGTTTCGCCAAACAAATGCACAGAGTTATGCTTTCAGAGCTCGAG
GAAGAGTTTACTCAGGCTGAATTAATGAAAGTCGTTGGGGAAATTGAAGACGAAGAAAGCATAAGTTATGGGAAGGAACA
GTTTGATGCGATTGAGAAAGCCCTTCATTCCAAAACGATGATTCTAACAGGTGGACCTGGTACTGGAAAAACGACAGTTA
TTAAAGGGATTGTCAACGCTTACGCCAAATTGAAGCGAAAGTCTCTCAAGCCTGCTGATTATGGAAAAGATGAACCGTTC
CCATTCCTTCTGACAGCTCCAACGGGAAGAGCAGCCAAACGCATGAATGAATCAACAGGATTGCCAGCAGTCACCATTCA
CCGCTTGCTTGGATGGACAGGTGGTGAGTCATTTGATAAAGACCAAAACAATCAACTAAGTGGAAAGATATTAATAATTG
ATGAATTCTCTATGGTTGATATCTGGCTTGCGAATCAACTGTTTCGGGCCATACCTGATGATATGCAAGTGCTGTTAGTA
GGGGATGAAGATCAGCTGCCATCTGTCGGACCAGGGCAAGTTTTATCTGACTTGTTAACGACTGATTACATACCAGCTAC
ACAGCTCAAAGAGGTATATCGGCAAAAGGAAGGCTCGCAAATTATTCGATTGGCACACGACATGAAAAAGGGCAAATGTG
ACGAAGAATCATTAGCCAAATCTCATGACTTTTCATTCATTACATGCCCTGAACCCCAGGTGTTGCCTGTTATTCAGCAA
GTTTATCAAAAGGCGATGGCAAGAGGCCATACTTTAAAAGATATCCAAATACTGGCCCCAATGTATCGGGCTAAGAATGG
TATTCATCAGCTTAATCAGGAGATTCAAGCACTCGCCAACCCTCCTTCTAGACAGCGTAGGGAAATAAAGATGAAAGATG
ACCTCACTTATCGCTCTGGGGATAAAGTTATTCAGCTTGTCAACCAGCCTGAGTCAGGGGTCTACAATGGAGACATAGGT
GAAATTGTCGCGATTTACAGAGCTGATGAGACGAAGGAACAAAAAGAGAAGCTTGTTGTGTCCTTTGAAGGCAAGGAAGT
GGAGTACTTACGTAAAGATTTGAACCAACTGATGCATGCCTATTGTACATCCATTCACAAGTCTCAAGGAAGCGAATTTC
CGATTGTTATTTTACCTGTTGTAAGAGGATACAGTCGAATGCTTCGAAGAAACCTGTTATACACGGCGGTTACACGTAGT
AAGCAATCCCTTATTATCTGTGGAGACCAAGAAGCCTTTAAGCGAGGTGTAGACACAGTAGATACCAATCGCCGCTTTAC
GGATTTGCCTGATAAGATCAAGATTTACATGGAAGCTGAAGTGAAGGATGAAGAGGATCTCGATGAGGAAGAACTTTCCC
CTTATGACTTCATGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-662)

AAA domain (AAA_30)

(343-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.447

100

0.508