Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   VA210_RS05410 Genome accession   NZ_CP141773
Coordinates   1112632..1112874 (-) Length   80 a.a.
NCBI ID   WP_411377746.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08205     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1107632..1117874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA210_RS05395 - 1108413..1108601 (+) 189 Protein_1058 DUF1104 domain-containing protein -
  VA210_RS05400 - 1108564..1110199 (-) 1636 Protein_1059 type IA DNA topoisomerase -
  VA210_RS05405 - 1110202..1112569 (-) 2368 Protein_1060 VirB4 family type IV secretion/conjugal transfer ATPase -
  VA210_RS05410 comB3 1112632..1112874 (-) 243 WP_411377746.1 virB3 type IV secretion protein Machinery gene
  VA210_RS05415 - 1112875..1113093 (-) 219 WP_014535263.1 hypothetical protein -
  VA210_RS05420 - 1113173..1114700 (-) 1528 Protein_1063 hypothetical protein -
  VA210_RS05425 - 1114707..1115001 (-) 295 Protein_1064 hypothetical protein -
  VA210_RS05430 - 1115021..1115800 (-) 780 WP_324713461.1 hypothetical protein -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 9196.91 Da        Isoelectric Point: 4.2870

>NTDB_id=837843 VA210_RS05410 WP_411377746.1 1112632..1112874(-) (comB3) [Helicobacter pylori strain P08205]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLS

Nucleotide


Download         Length: 243 bp        

>NTDB_id=837843 VA210_RS05410 WP_411377746.1 1112632..1112874(-) (comB3) [Helicobacter pylori strain P08205]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGTAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGC
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

45.714

87.5

0.4