Detailed information NTG0837831

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: VA210_RS03710
• Genome accession: NZ_CP141773
• Coordinates: 777362..778537 (+)
• Length: 391 a.a.
• NCBI ID: WP_324714158.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P08205
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 772362..783537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA210_RS03685	-	772648..773544 (+)	897	WP_000697563.1	OriC activity response regulator	-
VA210_RS03690	-	773770..774636 (+)	867	WP_324714187.1	5'-3' exonuclease	-
VA210_RS03695	-	774700..775950 (-)	1251	WP_324714155.1	hypothetical protein	-
VA210_RS03700	-	776118..776984 (+)	867	WP_324714157.1	DnaJ C-terminal domain-containing protein	-
VA210_RS03705	-	776994..777365 (+)	372	WP_000332994.1	heat shock protein transcriptional repressor HspR	-
VA210_RS03710	rarA	777362..778537 (+)	1176	WP_324714158.1	replication-associated recombination protein A	Machinery gene
VA210_RS03715	fur	778697..779149 (+)	453	WP_000824992.1	ferric iron uptake transcriptional regulator	-
VA210_RS03720	-	779169..779666 (-)	498	WP_212877409.1	DUF2147 domain-containing protein	-
VA210_RS03725	-	779663..780199 (-)	537	WP_324714159.1	YhcH/YjgK/YiaL family protein	-
VA210_RS03730	fliY	780227..781090 (-)	864	WP_324714160.1	flagellar motor switch protein FliY	-
VA210_RS03735	fliM	781094..782158 (-)	1065	WP_024115933.1	flagellar motor switch protein FliM	-
VA210_RS03740	-	782151..782927 (-)	777	WP_000602378.1	RNA polymerase sigma factor FliA	-
VA210_RS03745	-	782905..783219 (-)	315	WP_000867999.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43876.50 Da
• Isoelectric Point: 8.4047

>NTDB_id=837831 VA210_RS03710 WP_324714158.1 777362..778537(+) (rarA) [Helicobacter pylori strain P08205]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSTKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAF
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=837831 VA210_RS03710 WP_324714158.1 777362..778537(+) (rarA) [Helicobacter pylori strain P08205]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTAG
CTCAAATCATCGCCCGCGCACTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCACTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTAGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTTT
AGAGCGATCAATCAAGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

• AAA C-terminal domain (AAA_assoc_2) (168-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.136	100	0.391