Detailed information NTG0837797

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: VA211_RS05155
• Genome accession: NZ_CP141771
• Coordinates: 1071202..1072377 (+)
• Length: 391 a.a.
• NCBI ID: WP_324684458.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P08204
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1066202..1077377

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA211_RS05130	-	1066487..1067383 (+)	897	WP_000697549.1	OriC activity response regulator	-
VA211_RS05135	-	1067636..1068472 (+)	837	WP_324684448.1	5'-3' exonuclease	-
VA211_RS05140	-	1068537..1069790 (-)	1254	WP_324684450.1	hypothetical protein	-
VA211_RS05145	-	1069958..1070824 (+)	867	WP_324684452.1	DnaJ C-terminal domain-containing protein	-
VA211_RS05150	-	1070834..1071205 (+)	372	WP_000332994.1	heat shock protein transcriptional repressor HspR	-
VA211_RS05155	rarA	1071202..1072377 (+)	1176	WP_324684458.1	replication-associated recombination protein A	Machinery gene
VA211_RS05160	fur	1072537..1072989 (+)	453	WP_000825002.1	ferric iron uptake transcriptional regulator	-
VA211_RS05165	-	1073009..1073506 (-)	498	WP_000780295.1	DUF2147 domain-containing protein	-
VA211_RS05170	-	1073503..1074039 (-)	537	WP_000963995.1	YhcH/YjgK/YiaL family protein	-
VA211_RS05175	fliY	1074068..1074931 (-)	864	WP_324684463.1	flagellar motor switch protein FliY	-
VA211_RS05180	fliM	1074935..1075999 (-)	1065	WP_000763605.1	flagellar motor switch protein FliM	-
VA211_RS05185	-	1075992..1076768 (-)	777	WP_000602378.1	RNA polymerase sigma factor FliA	-
VA211_RS05190	-	1076746..1077060 (-)	315	WP_120943055.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43890.46 Da
• Isoelectric Point: 7.7629

>NTDB_id=837797 VA211_RS05155 WP_324684458.1 1071202..1072377(+) (rarA) [Helicobacter pylori strain P08204]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELIPLNKSDLDKLCTK
ALTWLKKQIEPSAKTYLLNNSTGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=837797 VA211_RS05155 WP_324684458.1 1071202..1072377(+) (rarA) [Helicobacter pylori strain P08204]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGTGCGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGATCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATGGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCACTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTATTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCCAACACAGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

• AAA C-terminal domain (AAA_assoc_2) (168-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.136	100	0.391