Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QMM94_RS05830 Genome accession   NZ_AP027134
Coordinates   1216323..1217096 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain JP008     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1211323..1222096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM94_RS05810 (JP008_11270) trmFO 1211667..1212974 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QMM94_RS05815 (JP008_11280) xerC 1213391..1214287 (+) 897 WP_154283919.1 tyrosine recombinase XerC -
  QMM94_RS05820 (JP008_11290) hslV 1214284..1214829 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QMM94_RS05825 (JP008_11300) hslU 1214895..1216298 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QMM94_RS05830 (JP008_11310) codY 1216323..1217096 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QMM94_RS05835 - 1217147..1217239 (+) 93 WP_001790530.1 hypothetical protein -
  QMM94_RS05840 (JP008_11320) rpsB 1217438..1218205 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  QMM94_RS05845 - 1218239..1218352 (+) 114 WP_001789890.1 hypothetical protein -
  QMM94_RS05850 (JP008_11330) tsf 1218387..1219268 (+) 882 WP_281962047.1 translation elongation factor Ts -
  QMM94_RS05855 (JP008_11340) pyrH 1219405..1220127 (+) 723 WP_000057330.1 UMP kinase -
  QMM94_RS05860 (JP008_11350) frr 1220146..1220700 (+) 555 WP_001280006.1 ribosome recycling factor -
  QMM94_RS05865 (JP008_11360) - 1221073..1221843 (+) 771 WP_154283921.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=83779 QMM94_RS05830 WP_000055337.1 1216323..1217096(+) (codY) [Staphylococcus aureus strain JP008]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=83779 QMM94_RS05830 WP_000055337.1 1216323..1217096(+) (codY) [Staphylococcus aureus strain JP008]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACTATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment