Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QN096_RS26040 Genome accession   NZ_CP126342
Coordinates   5627007..5629130 (-) Length   707 a.a.
NCBI ID   WP_284547387.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain TL17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5622007..5634130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN096_RS26025 (QN096_26025) - 5623649..5625316 (-) 1668 WP_284547386.1 SPOR domain-containing protein -
  QN096_RS26030 (QN096_26030) aroB 5625327..5626430 (-) 1104 WP_142013730.1 3-dehydroquinate synthase -
  QN096_RS26035 (QN096_26035) aroK 5626483..5627001 (-) 519 WP_074973697.1 shikimate kinase AroK -
  QN096_RS26040 (QN096_26040) pilQ 5627007..5629130 (-) 2124 WP_284547387.1 type IV pilus secretin PilQ Machinery gene
  QN096_RS26045 (QN096_26045) pilP 5629185..5629715 (-) 531 WP_284550262.1 type 4a pilus biogenesis lipoprotein PilP -
  QN096_RS26050 (QN096_26050) pilO 5629715..5630338 (-) 624 WP_284547388.1 type 4a pilus biogenesis protein PilO -
  QN096_RS26055 (QN096_26055) pilN 5630335..5630907 (-) 573 WP_044406731.1 type 4a pilus biogenesis protein PilN -
  QN096_RS26060 (QN096_26060) pilM 5630907..5631971 (-) 1065 WP_044406728.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76172.63 Da        Isoelectric Point: 5.2855

>NTDB_id=837765 QN096_RS26040 WP_284547387.1 5627007..5629130(-) (pilQ) [Pseudomonas otitidis strain TL17]
MNSSLTRLGLSLLAAMFSPVLLAADLKALDVAALPGGKVELKLGFDGPVVQPRGYTIEQPARIALDLPGVANKLGSKNRE
LGVGNARSVTLVEAKDRTRMIINLSTLVPYSTRVEGNNLYVLVGDAAGAAQQAARTSAPLAAPSQPAAPVKAFAPVGKAI
SNIDFQRGEQGEGNVVITLSDPSVSPNIQEQGGKIRLDFSKTQIPESLRVRLDVKDFATPVQFVSASGSSGDASIVIEPT
GFYDYLAYQTENKLTVSIKPLTQEDMEKRKTERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQ
NVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQISELAPLRRELIQVNYAKAADIAKLFQSVTSGE
PAATDERGSITVDDRTNSIIAYQTQDKLDELRRIVTQLDIPVRQVMIEARIVEANVDYDKALGVRWGGAYTNGNWNSWGK
SGNIGIKDGDGVSCGPFKGNCTLPTTNNNPTPFVDMGVSNSTSGIGIGFISSHAILDLQLSAMEKTGNGEIVSQPKVVTS
DKETAKILKGSEIPYQEASSSGATTTSFKEAALSLEVTPQITPDNRIIMEVKVNKDAPDFANQLNGVPPINKNEVNAKVL
VSDGETIVIGGVFSNTQTKAVDKVPFLGDLPFVGRVFRRDVVQDKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=837765 QN096_RS26040 WP_284547387.1 5627007..5629130(-) (pilQ) [Pseudomonas otitidis strain TL17]
ATGAACAGCTCCCTGACGCGCCTTGGACTTTCTCTTCTGGCGGCTATGTTTTCACCCGTGTTGCTGGCTGCTGACCTCAA
GGCTCTAGACGTCGCGGCACTGCCAGGCGGAAAGGTCGAGCTGAAACTCGGTTTCGACGGCCCCGTTGTACAGCCGAGAG
GCTACACGATTGAACAGCCTGCAAGGATCGCATTGGACCTGCCCGGCGTTGCCAACAAACTTGGCAGCAAGAACCGAGAG
CTGGGGGTAGGTAACGCTCGGAGCGTCACTCTTGTCGAGGCGAAAGATCGCACTCGCATGATCATCAACCTTTCGACGTT
GGTGCCTTACAGCACGCGAGTTGAGGGCAACAACCTTTATGTTCTGGTTGGCGATGCTGCCGGCGCAGCTCAACAGGCTG
CACGCACCAGTGCGCCACTAGCGGCTCCGTCACAGCCTGCCGCGCCGGTCAAAGCGTTCGCGCCTGTGGGCAAGGCAATC
AGCAATATTGATTTCCAGAGAGGCGAGCAGGGCGAAGGCAACGTCGTCATTACTTTGTCCGACCCCAGTGTAAGTCCCAA
CATCCAGGAGCAGGGTGGAAAGATTCGCCTGGACTTTTCCAAGACCCAAATTCCAGAGTCTCTGCGTGTTCGTCTTGATG
TAAAGGATTTCGCGACTCCCGTTCAGTTCGTCAGTGCGTCCGGCAGCTCAGGTGATGCCAGTATCGTGATCGAGCCGACG
GGCTTTTATGACTACCTGGCCTATCAGACTGAAAACAAGCTGACTGTCAGCATCAAGCCGCTTACCCAAGAAGATATGGA
GAAGCGCAAGACCGAGCGCTTTGCCTATTCTGGCGAAAAGCTGTCGCTCAATTTCCAGGATATTGATGTCCGCTCGGTAT
TGCAGCTGATCGCTGACTTCACCGACCTCAACTTGGTTGCCTCTGATACCGTCCAAGGCAATATTACGCTCCGCCTGCAA
AACGTGCCTTGGGATCAGGCGCTTGACCTCGTCCTGAAAACCAAAGGCCTGGACAAGCGCAAGGTCGGTAACGTGCTGCT
GGTTGCGCCAGCGGACGAGATCGCTGCCCGTGAACGCCAGGAACTGGAGTCTCAGAAGCAGATTTCCGAACTGGCTCCGT
TGCGCCGCGAGCTTATCCAAGTCAATTACGCTAAAGCTGCTGATATCGCCAAGCTCTTTCAATCCGTTACCAGTGGAGAG
CCTGCTGCCACGGATGAGCGTGGTTCCATTACGGTTGATGATCGGACAAATAGTATTATTGCCTATCAGACTCAAGACAA
ACTGGACGAGTTGCGCCGTATTGTTACTCAGCTCGATATTCCTGTCCGCCAAGTAATGATTGAGGCTCGGATTGTTGAGG
CGAATGTCGACTACGACAAGGCCTTAGGCGTAAGGTGGGGTGGGGCTTACACCAATGGGAACTGGAATAGTTGGGGGAAG
AGCGGCAATATCGGTATTAAGGATGGCGATGGAGTATCTTGCGGACCCTTCAAGGGAAACTGTACGCTGCCTACTACTAA
TAATAATCCAACGCCCTTTGTAGATATGGGTGTCTCCAATAGTACTTCTGGAATTGGCATAGGCTTCATTTCAAGTCATG
CGATTCTTGATTTGCAGCTCTCTGCAATGGAAAAAACTGGAAATGGAGAGATCGTTTCTCAGCCTAAAGTGGTTACTTCT
GATAAAGAGACGGCAAAGATTCTGAAAGGTTCGGAAATTCCCTATCAGGAAGCAAGTTCCAGTGGCGCCACTACTACATC
CTTCAAAGAGGCTGCGCTTTCGCTGGAAGTTACCCCGCAAATTACTCCGGATAATCGAATTATCATGGAGGTGAAAGTCA
ATAAAGATGCGCCAGATTTTGCTAATCAACTTAATGGTGTTCCGCCGATCAATAAGAATGAGGTGAATGCTAAGGTTTTG
GTTAGCGATGGCGAGACTATTGTAATAGGTGGGGTTTTCTCCAATACACAGACCAAAGCTGTAGACAAGGTACCTTTCCT
TGGTGATCTGCCATTTGTAGGGCGAGTGTTCCGAAGAGATGTTGTTCAAGACAAGAAATCCGAGCTGCTGGTATTCCTGA
CTCCGCGTATCATGAACAACCAGGCTATCGCTGTGAGTCGCTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(304-350)

Bacterial type II and III secretion system protein (Secretin)

(542-698)

AMIN domain (AMIN)

(40-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

78.631

100

0.796
  comQ Acinetobacter baylyi ADP1

43.143

99.01

0.427
  pilQ Acinetobacter baumannii strain A118

42.031

100

0.421
  pilQ Acinetobacter baumannii D1279779

42.031

100

0.421
  pilQ Legionella pneumophila strain Lp02

37.758

95.898

0.362
  pilQ Legionella pneumophila strain ERS1305867

37.758

95.898

0.362