Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   VLX10_RS30560 Genome accession   NZ_CP141753
Coordinates   6492546..6493142 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain 2023CK-01336     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6487546..6498142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VLX10_RS30540 (VLX10_30540) aroK 6488677..6489195 (-) 519 WP_003095833.1 shikimate kinase AroK -
  VLX10_RS30545 (VLX10_30545) pilQ 6489207..6491351 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  VLX10_RS30550 (VLX10_30550) comL/pilP 6491405..6491929 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  VLX10_RS30555 (VLX10_30555) pilO 6491926..6492549 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  VLX10_RS30560 (VLX10_30560) pilN 6492546..6493142 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  VLX10_RS30565 (VLX10_30565) pilM 6493142..6494206 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  VLX10_RS30570 (VLX10_30570) - 6494391..6496862 (+) 2472 WP_003125627.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=837495 VLX10_RS30560 WP_003095839.1 6492546..6493142(-) (pilN) [Pseudomonas aeruginosa strain 2023CK-01336]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=837495 VLX10_RS30560 WP_003095839.1 6492546..6493142(-) (pilN) [Pseudomonas aeruginosa strain 2023CK-01336]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369