Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QN061_RS14490 Genome accession   NZ_CP126305
Coordinates   3091406..3092107 (+) Length   233 a.a.
NCBI ID   WP_020329341.1    Uniprot ID   S7JLG0
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3086406..3097107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS14470 (QN061_14470) - 3086841..3087503 (+) 663 WP_202641554.1 hypothetical protein -
  QN061_RS14475 (QN061_14475) - 3087559..3089868 (+) 2310 WP_284162039.1 Tex family protein -
  QN061_RS14480 (QN061_14480) - 3089950..3090420 (-) 471 WP_020329343.1 hypothetical protein -
  QN061_RS14485 (QN061_14485) bioH 3090549..3091319 (-) 771 WP_020329342.1 pimeloyl-ACP methyl ester esterase BioH -
  QN061_RS14490 (QN061_14490) comF 3091406..3092107 (+) 702 WP_020329341.1 phosphoribosyltransferase family protein Machinery gene
  QN061_RS14495 (QN061_14495) nfuA 3092208..3092795 (+) 588 WP_020329340.1 Fe-S biogenesis protein NfuA -
  QN061_RS14500 (QN061_14500) nudE 3092941..3093489 (+) 549 WP_020329339.1 ADP compounds hydrolase NudE -
  QN061_RS14505 (QN061_14505) cysQ 3093513..3094340 (+) 828 WP_020329338.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QN061_RS14510 (QN061_14510) - 3094370..3095128 (-) 759 WP_020329337.1 type II secretion system protein N -
  QN061_RS14515 (QN061_14515) - 3095128..3095634 (-) 507 WP_020329336.1 type II secretion system protein M -
  QN061_RS14520 (QN061_14520) gspL 3095644..3096855 (-) 1212 WP_020329335.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26336.37 Da        Isoelectric Point: 8.8535

>NTDB_id=837444 QN061_RS14490 WP_020329341.1 3091406..3092107(+) (comF) [Vibrio fluvialis strain SD21SC3889PM]
MLTNRLQKTMFSWLRPSCQLCGLPLESHSTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDY
RFPLSQSVHQLKYQRQFWQAQPLAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRL
ATPPQQGLNKAQRRRNLNQAFVLNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=837444 QN061_RS14490 WP_020329341.1 3091406..3092107(+) (comF) [Vibrio fluvialis strain SD21SC3889PM]
ATGTTAACCAATCGACTTCAAAAAACCATGTTTTCGTGGCTGAGGCCGTCGTGTCAGCTGTGCGGTTTGCCCCTTGAATC
GCATAGCACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGTTGCGCTCGCTGCGGCCTGCCTT
GTGAAACCGCCACCGAACAGTGTGGCCAATGCCTGACATCGCCGCCGCCGTGGCACAAGCTCTATTGTTTGGGCGATTAC
CGTTTTCCACTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCGCTGGCCGGATTGTT
AGCACCACGAATAGTATCACCCGCCCCACTGGTGACCTGCGTGCCGCTGCACTGGCGCCGCCATGCCTGGCGCGGTTTCA
ATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGTTTTCCCGTCGCCTG
GCCACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGCCGGCGCAATCTCAACCAAGCTTTTGTCTTAAACAGTGCACC
GAGCCACAGACATATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATGCAATTTACTGCTTG
ATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7JLG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.807

100

0.648
  comF Vibrio campbellii strain DS40M4

49.791

100

0.511