Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U9S62_RS05735 Genome accession   NZ_CP141683
Coordinates   1259518..1259943 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain ZM21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1254518..1264943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9S62_RS05715 (U9S62_05715) ileS 1254675..1257506 (+) 2832 WP_014603309.1 isoleucine--tRNA ligase -
  U9S62_RS05720 (U9S62_05720) lspA 1257499..1258008 (+) 510 WP_003102615.1 signal peptidase II -
  U9S62_RS05725 (U9S62_05725) fkpB 1258001..1258441 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  U9S62_RS05730 (U9S62_05730) ispH 1258527..1259471 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U9S62_RS05735 (U9S62_05735) comF 1259518..1259943 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  U9S62_RS05740 (U9S62_05740) pilY2 1259940..1260287 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  U9S62_RS05745 (U9S62_05745) pilY1 1260289..1263780 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  U9S62_RS05750 (U9S62_05750) pilX 1263792..1264379 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=837174 U9S62_RS05735 WP_003094721.1 1259518..1259943(-) (comF) [Pseudomonas aeruginosa strain ZM21]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=837174 U9S62_RS05735 WP_003094721.1 1259518..1259943(-) (comF) [Pseudomonas aeruginosa strain ZM21]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383