Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   U9S62_RS03165 Genome accession   NZ_CP141683
Coordinates   684005..684601 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain ZM21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 679005..689601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9S62_RS03155 (U9S62_03155) - 680288..682756 (-) 2469 WP_003114576.1 penicillin-binding protein 1A -
  U9S62_RS03160 (U9S62_03160) pilM 682941..684005 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  U9S62_RS03165 (U9S62_03165) pilN 684005..684601 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  U9S62_RS03170 (U9S62_03170) pilO 684598..685221 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  U9S62_RS03175 (U9S62_03175) comL/pilP 685218..685742 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  U9S62_RS03180 (U9S62_03180) pilQ 685796..687940 (+) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  U9S62_RS03185 (U9S62_03185) aroK 687952..688470 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=837166 U9S62_RS03165 WP_003095839.1 684005..684601(+) (pilN) [Pseudomonas aeruginosa strain ZM21]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=837166 U9S62_RS03165 WP_003095839.1 684005..684601(+) (pilN) [Pseudomonas aeruginosa strain ZM21]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369