Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VA249_RS00705 Genome accession   NZ_AP024165
Coordinates   150740..151510 (-) Length   256 a.a.
NCBI ID   WP_221068484.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya108     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145740..156510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA249_RS00680 (VYA_01230) - 146786..147277 (+) 492 WP_221069762.1 type II secretion system protein M -
  VA249_RS00685 (VYA_01240) - 147279..148040 (+) 762 WP_221068483.1 type II secretion system protein N -
  VA249_RS00690 (VYA_01250) cysQ 148436..149263 (-) 828 WP_128812014.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VA249_RS00695 (VYA_01260) nudE 149326..149889 (-) 564 WP_211915593.1 ADP compounds hydrolase NudE -
  VA249_RS00700 (VYA_01270) nfuA 150058..150642 (-) 585 WP_128812012.1 Fe-S biogenesis protein NfuA -
  VA249_RS00705 comF 150740..151510 (-) 771 WP_221068484.1 ComF family protein Machinery gene
  VA249_RS00710 (VYA_01300) bioH 151595..152359 (+) 765 WP_221068485.1 pimeloyl-ACP methyl ester esterase BioH -
  VA249_RS00715 (VYA_01310) - 152489..152953 (+) 465 WP_221068486.1 ATP-dependent Lon protease -
  VA249_RS00720 (VYA_01320) - 153069..155387 (-) 2319 WP_221068487.1 Tex family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28866.24 Da        Isoelectric Point: 8.7676

>NTDB_id=83714 VA249_RS00705 WP_221068484.1 150740..151510(-) (comF) [Vibrio alfacsensis strain 04Ya108]
MLSHQWQNIMHRVLGSQCGLCRLPIDAYQATNPLRWCEHCFAQLNSIQRCARCGLSMINEQGSANGLVSANPAPQIDQAK
TQCGACLRDPPPWQRLFTLGDYDFPLSVQVQRFKDHAEPWHVNALTQLLAQRIEHPAPVITCVPLHWQRYLKRGFNQSHT
LARYLANHLEVRFEPNVFKRIKSAPSQRGHKKSNRELNLKGAFALKGKVRDSHVAIVDDVVTTGSTVRQLCDLLLEVGVE
SIDIYCICRTPAPGSL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=83714 VA249_RS00705 WP_221068484.1 150740..151510(-) (comF) [Vibrio alfacsensis strain 04Ya108]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGTGTGTTGGGCAGTCAATGTGGTTTATGTCGATTACCAATTGACGC
CTATCAAGCGACCAATCCACTACGCTGGTGCGAGCACTGTTTTGCTCAACTTAACTCCATACAACGTTGCGCTCGGTGCG
GTTTATCGATGATAAATGAGCAGGGTAGTGCCAACGGTCTTGTCTCTGCCAACCCAGCGCCTCAAATCGACCAAGCCAAA
ACACAATGTGGAGCATGCTTACGCGATCCCCCGCCATGGCAGCGCTTGTTCACACTGGGTGATTATGACTTCCCACTCTC
AGTCCAAGTTCAACGATTTAAAGATCACGCTGAACCTTGGCACGTTAATGCACTCACTCAATTACTTGCACAACGAATTG
AGCATCCCGCGCCAGTTATCACCTGCGTTCCACTGCATTGGCAACGGTACCTAAAGCGAGGTTTCAATCAAAGCCATACT
CTTGCAAGATACTTAGCAAACCACCTTGAGGTAAGGTTTGAACCCAACGTGTTTAAACGCATCAAGAGTGCCCCATCACA
ACGGGGGCATAAGAAAAGCAACCGGGAGCTAAATTTGAAAGGTGCATTTGCACTAAAAGGCAAAGTGCGCGATTCTCATG
TCGCAATTGTTGATGATGTCGTCACAACGGGCAGTACCGTCCGACAATTATGTGATTTACTACTTGAAGTCGGTGTAGAA
AGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCAGGCTCACTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(159-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.312

100

0.703
  comF Vibrio cholerae strain A1552

47.036

98.828

0.465

Multiple sequence alignment