Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   U3O62_RS01215 Genome accession   NZ_CP141581
Coordinates   267093..267857 (-) Length   254 a.a.
NCBI ID   WP_196467941.1    Uniprot ID   -
Organism   Escherichia coli strain ECO-104     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 262093..272857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3O62_RS01205 (U3O62_01205) nikR 265883..266284 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  U3O62_RS01210 (U3O62_01210) nikE 266290..267096 (-) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  U3O62_RS01215 (U3O62_01215) amiE 267093..267857 (-) 765 WP_196467941.1 nickel import ATP-binding protein NikD Regulator
  U3O62_RS01220 (U3O62_01220) nikC 267857..268690 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  U3O62_RS01225 (U3O62_01225) nikB 268687..269631 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  U3O62_RS01230 (U3O62_01230) nikA 269631..271205 (-) 1575 WP_000953361.1 nickel ABC transporter substrate-binding protein -
  U3O62_RS01235 (U3O62_01235) acpT 271316..271903 (-) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26836.42 Da        Isoelectric Point: 6.3761

>NTDB_id=836985 U3O62_RS01215 WP_196467941.1 267093..267857(-) (amiE) [Escherichia coli strain ECO-104]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADELTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=836985 U3O62_RS01215 WP_196467941.1 267093..267857(-) (amiE) [Escherichia coli strain ECO-104]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACTGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.2

98.425

0.406
  amiE Streptococcus thermophilus LMD-9

41.2

98.425

0.406
  amiE Streptococcus salivarius strain HSISS4

40

98.425

0.394