Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNN06_RS24400 Genome accession   NZ_CP126144
Coordinates   4964565..4966928 (-) Length   787 a.a.
NCBI ID   WP_284036089.1    Uniprot ID   -
Organism   Neobacillus sp. 114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4959565..4971928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNN06_RS24385 dtd 4961157..4961597 (-) 441 WP_217033768.1 D-aminoacyl-tRNA deacylase -
  QNN06_RS24390 - 4961610..4963805 (-) 2196 WP_217033770.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNN06_RS24395 - 4964062..4964574 (-) 513 WP_213120050.1 adenine phosphoribosyltransferase -
  QNN06_RS24400 recJ 4964565..4966928 (-) 2364 WP_284036089.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNN06_RS24405 secDF 4967043..4969304 (-) 2262 WP_284036090.1 protein translocase subunit SecDF -
  QNN06_RS24410 - 4969437..4969721 (-) 285 WP_308170358.1 post-transcriptional regulator -
  QNN06_RS24415 spoVB 4969851..4971404 (+) 1554 WP_217033780.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88329.44 Da        Isoelectric Point: 5.0684

>NTDB_id=836961 QNN06_RS24400 WP_284036089.1 4964565..4966928(-) (recJ) [Neobacillus sp. 114]
MLKSKTRWIVRESDPTLVKKLENELKITPLVASLLVNRGLDTVDSARYFLFGKADFHDPYLLKGMDIAVKRIRDAIERKE
PILIFGDYDADGVSSTSVLMITLRDLGADVQFYIPNRFTEGYGPNEPAFRHAAEAGIKLIITVDTGIAAIHEAAVAKELG
VDLIITDHHEPGPVLPEALAIIHPKLPDSIYPFRELAGVGVAFKLAHALYGKVPEHLFEIAVIGTIADLVSLKDENRLIA
KKGLEKLKVTENIGLKAIFKIAGVDLQSINEETIGFTLAPRINAVGRLEEADLAVRLLLTDDSMEAEELAAEMDALNKTR
QTIVNTITEEAIEEVEKNFPIEAGKVLVIGKEGWNAGVIGIVASRLVEKYYRPTIVLSFDHEKGLAKGSARSIPGFDLFH
NLSTCREILPHFGGHPMAAGMTLKIDDVPILRARLNKLADDLLTDEDFIPVTFLDEEVHLEDIHLTSLEEMNLLSPFGMD
NSKPKVLINQVDVASIRKIGSEQNHMKLSLTENDANLDGVGFGLGSIVDEISPLAKISLIGELSINEWNNIRKPQIMVQD
IAVESWQLFDFRGQKRLNNIGVTVPAENRKIIFFNQSHLEKLAPNLHQESIIIRDTIEASAFNDYEGNIILADFPSSKEL
LTELLKGNKPGRIYAYFYKESSDFFSTLPTREHFKWYYAFLLKNGPIDLKRYGDDIAKHRGWSKETINFMSKVFYELDFV
TINNGFITLNRSAQKRDLTYSPTYQLKKNQYDLERELLFSSYQELKGWFDGIIGESVVIEEAVKEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=836961 QNN06_RS24400 WP_284036089.1 4964565..4966928(-) (recJ) [Neobacillus sp. 114]
ATGTTAAAGTCTAAAACAAGATGGATTGTTCGTGAATCAGATCCGACCCTAGTGAAAAAACTGGAAAACGAGTTGAAAAT
TACACCTCTAGTGGCTTCGCTGCTTGTCAACCGTGGATTAGATACCGTTGATTCTGCACGGTATTTTTTATTTGGAAAAG
CTGACTTCCACGACCCCTATTTGTTAAAAGGGATGGATATTGCCGTTAAAAGAATTCGTGATGCAATCGAACGGAAGGAA
CCGATTCTTATATTTGGCGATTATGATGCGGATGGCGTCAGTAGTACATCCGTGTTAATGATTACACTCAGAGATTTAGG
GGCAGATGTCCAATTCTATATTCCAAACCGTTTTACAGAGGGCTATGGCCCTAATGAGCCTGCATTTCGCCATGCGGCGG
AAGCAGGAATAAAATTGATTATTACCGTAGATACCGGAATTGCCGCTATTCATGAAGCGGCGGTGGCAAAGGAATTGGGT
GTGGATTTAATCATTACGGACCACCATGAACCAGGGCCTGTTTTGCCGGAAGCTTTGGCGATTATTCATCCAAAGCTGCC
TGACAGCATTTACCCGTTTCGCGAACTTGCTGGTGTGGGGGTTGCCTTTAAATTAGCCCATGCTTTATATGGAAAAGTGC
CTGAGCATTTGTTTGAAATTGCGGTGATTGGTACAATTGCCGATTTAGTCTCTTTAAAAGACGAAAACCGGCTGATTGCT
AAAAAGGGCCTAGAAAAATTGAAGGTCACTGAGAACATTGGTTTAAAGGCCATATTTAAAATCGCTGGTGTTGATTTGCA
ATCAATAAATGAAGAAACCATTGGTTTTACACTTGCACCTCGTATCAATGCCGTAGGTAGGCTAGAGGAAGCCGATTTGG
CAGTCCGTCTCCTTCTTACCGATGACTCTATGGAGGCTGAAGAATTAGCCGCTGAGATGGATGCCCTCAATAAAACAAGG
CAAACCATCGTAAACACAATAACCGAAGAGGCAATTGAGGAAGTTGAAAAGAATTTCCCGATTGAGGCGGGTAAGGTTCT
GGTGATTGGGAAGGAAGGCTGGAATGCCGGTGTCATTGGTATCGTCGCCTCGAGACTGGTTGAAAAATATTACCGCCCAA
CGATCGTGCTAAGTTTTGACCATGAAAAAGGGCTGGCAAAGGGCTCGGCACGAAGTATTCCCGGTTTTGATCTTTTTCAT
AATTTATCAACTTGCAGGGAAATCCTGCCGCATTTTGGCGGACATCCAATGGCTGCCGGAATGACACTGAAAATTGATGA
CGTACCAATCCTAAGGGCGCGCTTAAATAAGTTAGCCGATGACCTCCTAACGGATGAGGATTTTATTCCGGTAACCTTTC
TTGATGAAGAGGTTCATCTAGAGGATATTCATTTAACCTCCCTGGAAGAAATGAACCTGTTGTCACCATTCGGAATGGAT
AACTCCAAACCAAAGGTGTTAATCAATCAGGTGGATGTTGCTAGTATCAGAAAAATTGGCAGCGAGCAAAATCATATGAA
ACTATCGCTTACTGAAAATGACGCCAATCTTGATGGGGTAGGCTTCGGTTTGGGTTCCATTGTTGATGAGATTTCTCCAT
TGGCTAAAATTTCGTTAATTGGTGAATTATCGATTAATGAATGGAACAATATACGTAAACCGCAAATCATGGTACAGGAC
ATTGCTGTAGAGTCTTGGCAGCTGTTTGATTTTCGCGGCCAAAAGCGGCTGAATAACATTGGTGTTACAGTGCCTGCAGA
AAATAGGAAGATTATCTTTTTTAATCAATCCCATCTTGAAAAACTTGCTCCAAACCTTCATCAGGAAAGTATTATTATCC
GGGACACAATTGAAGCGAGTGCATTTAATGACTATGAGGGTAACATTATACTAGCAGATTTTCCATCTTCAAAAGAGCTT
TTAACGGAATTGTTAAAGGGGAATAAGCCGGGAAGAATTTACGCTTATTTTTATAAAGAATCGAGCGATTTTTTCAGCAC
CTTACCGACAAGAGAACATTTTAAATGGTATTATGCTTTTCTTTTGAAAAATGGACCTATTGATCTGAAAAGGTATGGCG
ACGATATAGCTAAGCACCGCGGCTGGTCAAAGGAAACGATTAATTTTATGTCAAAGGTGTTTTATGAATTGGATTTTGTT
ACAATAAATAATGGTTTTATAACTTTAAATCGGTCAGCGCAAAAGCGCGATTTAACTTATTCGCCAACCTATCAATTGAA
AAAGAACCAATATGATCTTGAAAGGGAATTATTGTTTTCATCCTATCAAGAATTAAAAGGCTGGTTTGATGGGATTATTG
GTGAGTCAGTTGTAATTGAGGAGGCAGTAAAGGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

DHHA1 domain (DHHA1)

(314-438)

RecJ OB domain (RecJ_OB)

(455-560)

DHH family (DHH)

(82-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.856

98.729

0.551