Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNN06_RS24270 Genome accession   NZ_CP126144
Coordinates   4935764..4938184 (-) Length   806 a.a.
NCBI ID   WP_284036075.1    Uniprot ID   -
Organism   Neobacillus sp. 114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4930764..4943184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNN06_RS24245 - 4932883..4933962 (-) 1080 WP_284036073.1 AI-2E family transporter -
  QNN06_RS24250 - 4934054..4934188 (-) 135 WP_213120076.1 YrzQ family protein -
  QNN06_RS24255 - 4934211..4934402 (-) 192 WP_213120075.1 hypothetical protein -
  QNN06_RS24260 - 4934414..4934890 (-) 477 WP_213120074.1 PRC-barrel domain-containing protein -
  QNN06_RS24265 - 4935037..4935729 (+) 693 WP_284036074.1 N-acetylmuramoyl-L-alanine amidase -
  QNN06_RS24270 recD2 4935764..4938184 (-) 2421 WP_284036075.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNN06_RS24275 - 4938219..4938872 (-) 654 WP_284036076.1 tetratricopeptide repeat protein -
  QNN06_RS24280 mnmA 4939131..4940249 (-) 1119 WP_284036077.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNN06_RS24285 - 4940291..4941433 (-) 1143 WP_213120070.1 cysteine desulfurase family protein -
  QNN06_RS24290 - 4941479..4941898 (-) 420 WP_213120069.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 90886.94 Da        Isoelectric Point: 4.8909

>NTDB_id=836960 QNN06_RS24270 WP_284036075.1 4935764..4938184(-) (recD2) [Neobacillus sp. 114]
MVEKQESLDLFSGQGKFIKGRPIVTIFHNEQNLYTVIRIRVDETNQQYEDKEAVITGYFPKVHEQETYIFYGEFKDHPRF
GTQFHANHFRKEMPQSKQGVIAYLSGEMFKGIGKKTAENIVETLGEDAISKILNQPSLLDTIPKLPPDKAKQLYDTLMEH
QGLEQVMVALNQYGFGPQLSMRIYQTYKEKTLEIIQENPYQLVEDVEGIGFGRADELGYQLGISGSHPDRIKAGCLYTLE
NECMQTGHVYMQAQALLEQVKALLEENQRDVIDFLAISNEIIGLEKEGKIIGEEKRVYLPSLYFAEKGLVTSIKRILQQT
EYQDQFPESEFLLALGDLEERLGVQYAPTQREAIQTALMSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDIKDYQKK
DEPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGFNGTEGFDRDEGSPLEGKILIVDETSMLDIWLANQLFKALPENIQ
VIMVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEIKKGHLPADITQKQADRSFIRCTAAQISE
VVEKVALNAKNKGYTAKDIQVLAPMYRGPAGIDRLNLLLQEIFNPNPDGKRKEIQFGDVKYRIGDKVLQLVNQPENNVFN
GDIGEIISIIYAKENTEKQDMIYISFEGNEVEYTKQDLTQITHAYCCSVHKSQGSEFPIVILPVTRSYYRMLQRNLIYTA
ITRSKQSLILCGEVDALQMGVARADEMSRLTTLCEKLQENIAGKTAEIQKDKEQSKLSLEEELMTVNPMIGMENISPYDF
MEKTGS

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=836960 QNN06_RS24270 WP_284036075.1 4935764..4938184(-) (recD2) [Neobacillus sp. 114]
ATGGTGGAAAAGCAGGAATCGCTTGATTTGTTCAGCGGGCAGGGGAAGTTTATTAAAGGCCGGCCAATTGTGACGATTTT
TCACAATGAACAAAACCTCTATACTGTAATTCGAATCCGGGTAGATGAGACCAATCAACAGTATGAAGACAAAGAAGCTG
TCATTACTGGCTATTTTCCCAAAGTGCACGAACAGGAAACGTATATTTTTTACGGAGAATTTAAGGACCATCCCCGCTTT
GGCACTCAATTTCATGCGAACCATTTTCGTAAGGAAATGCCTCAATCCAAGCAGGGTGTCATAGCTTATTTATCCGGCGA
AATGTTCAAAGGAATCGGCAAGAAAACGGCGGAAAATATTGTGGAAACCTTGGGTGAGGATGCGATTTCGAAAATTCTCA
ATCAGCCCTCCCTCCTTGATACCATACCGAAACTCCCTCCTGATAAAGCAAAGCAGCTTTATGACACGTTAATGGAACAT
CAAGGTCTCGAACAGGTGATGGTCGCGTTAAACCAGTATGGTTTCGGCCCCCAGCTGTCGATGCGGATTTACCAAACTTA
TAAAGAAAAGACACTTGAGATTATCCAAGAGAACCCTTACCAACTGGTTGAGGATGTCGAGGGAATTGGTTTTGGCCGGG
CTGATGAGCTGGGTTACCAGCTTGGCATATCAGGCAGCCATCCTGACCGAATTAAGGCAGGATGTCTCTATACATTGGAA
AACGAATGCATGCAGACAGGGCATGTCTATATGCAAGCTCAAGCACTACTTGAACAGGTAAAAGCCCTTCTAGAAGAGAA
CCAACGCGACGTAATTGATTTTCTGGCTATCTCAAACGAAATTATCGGGCTTGAAAAGGAAGGTAAAATTATTGGCGAAG
AGAAACGAGTTTACCTGCCTTCCTTATACTTTGCGGAAAAAGGACTTGTCACCAGTATTAAACGAATCCTGCAGCAAACA
GAATATCAGGACCAATTCCCGGAATCGGAATTTTTGCTGGCATTAGGAGATTTGGAGGAACGGCTTGGGGTCCAGTATGC
CCCAACGCAAAGGGAAGCCATCCAAACAGCGTTAATGTCACCGATGCTAATCTTAACAGGCGGGCCCGGAACAGGGAAAA
CGACCGTTATCAAGGGGATTGTCGAGCTTTACGGAGAACTCCATGGCTGCTCCTTGGATATAAAGGATTATCAAAAAAAG
GACGAACCATTTCCGTTTCTGCTCGCGGCGCCTACCGGAAGGGCAGCGAAACGGATGAGTGAATCGACTGGACTGCCCGC
GGTCACGATTCACCGTCTGCTTGGCTTCAACGGAACGGAAGGCTTTGACCGTGATGAGGGGAGCCCGCTAGAAGGAAAAA
TTCTCATTGTCGATGAAACTTCAATGCTCGATATTTGGCTCGCGAATCAGCTCTTCAAAGCGTTGCCGGAAAACATTCAA
GTTATCATGGTAGGTGACGAAGACCAGTTGCCTTCTGTCGGCCCAGGCCAGGTTTTAAAGGATTTACTAAGATCGGAGCG
AATCCCGACAGTCCGGTTAACGGATATCTACCGCCAGGCGGAGGGCTCCTCTATTATTGAACTGGCGCATGAAATCAAAA
AGGGACATTTGCCGGCTGACATAACCCAAAAACAGGCCGACCGTTCCTTTATCAGATGTACTGCCGCACAAATCTCAGAA
GTAGTCGAAAAGGTCGCATTAAATGCGAAAAATAAGGGTTATACGGCAAAGGATATTCAGGTATTAGCCCCAATGTACCG
GGGGCCAGCCGGCATTGACCGATTAAATTTGCTCCTGCAGGAAATCTTTAACCCAAACCCGGATGGCAAAAGAAAAGAAA
TCCAATTTGGGGATGTTAAGTACCGGATTGGCGACAAAGTTCTTCAGCTAGTCAACCAGCCTGAGAATAATGTGTTTAAT
GGAGATATCGGGGAAATCATCTCCATCATCTATGCAAAGGAAAATACCGAAAAGCAGGATATGATTTATATTTCCTTTGA
AGGCAATGAAGTGGAGTATACAAAGCAGGATTTAACGCAAATCACCCATGCTTATTGCTGTTCGGTCCATAAATCGCAGG
GAAGTGAATTTCCGATAGTCATTCTTCCTGTAACTAGAAGTTATTACAGAATGCTGCAAAGGAATTTAATTTATACGGCG
ATAACAAGAAGCAAACAATCCTTGATATTATGCGGAGAGGTCGATGCACTGCAAATGGGGGTTGCGCGGGCGGATGAAAT
GTCAAGATTGACCACACTTTGTGAAAAACTTCAGGAAAACATTGCGGGGAAAACAGCCGAGATCCAAAAGGACAAAGAAC
AGAGCAAATTGTCTCTTGAGGAAGAATTAATGACCGTCAATCCGATGATTGGGATGGAAAATATTTCGCCGTATGACTTT
ATGGAGAAAACTGGCAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-665)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(346-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.357

97.891

0.61