Detailed information NTG0836930

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: QZD84_RS06310
• Genome accession: NZ_CP141290
• Coordinates: 1336112..1337401 (+)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM26A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1331112..1342401

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZD84_RS06295	lrp	1331612..1332105 (+)	494	Protein_1192	leucine-responsive transcriptional regulator Lrp	-
QZD84_RS06300	-	1332258..1335344 (+)	3087	WP_140089098.1	DNA translocase FtsK 4TM domain-containing protein	-
QZD84_RS06305	lolA	1335419..1336045 (+)	627	WP_308386188.1	outer membrane lipoprotein chaperone LolA	-
QZD84_RS06310	rarA	1336112..1337401 (+)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
QZD84_RS06315	serS	1337493..1338800 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
QZD84_RS06320	-	1339170..1339736 (+)	567	WP_257878593.1	ATPase	-
QZD84_RS06325	-	1339730..1340170 (+)	441	WP_025623088.1	hypothetical protein	-
QZD84_RS06330	-	1340305..1340571 (+)	267	WP_021454272.1	DksA/TraR family C4-type zinc finger protein	-
QZD84_RS06335	bioA	1340641..1341921 (-)	1281	WP_203528336.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=836930 QZD84_RS06310 WP_021447448.1 1336112..1337401(+) (rarA) [Vibrio parahaemolyticus strain BM26A]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=836930 QZD84_RS06310 WP_021447448.1 1336112..1337401(+) (rarA) [Vibrio parahaemolyticus strain BM26A]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGTGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385