Detailed information NTG0836842

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: QZL39_RS06260
• Genome accession: NZ_CP141287
• Coordinates: 1326298..1327587 (+)
• Length: 429 a.a.
• NCBI ID: WP_308390836.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain I14B
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1321298..1332587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL39_RS06245	lrp	1321797..1322291 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
QZL39_RS06250	-	1322444..1325530 (+)	3087	WP_308390292.1	DNA translocase FtsK 4TM domain-containing protein	-
QZL39_RS06255	lolA	1325605..1326231 (+)	627	WP_005460060.1	outer membrane lipoprotein chaperone LolA	-
QZL39_RS06260	rarA	1326298..1327587 (+)	1290	WP_308390836.1	replication-associated recombination protein A	Machinery gene
QZL39_RS06265	serS	1327679..1328986 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
QZL39_RS06270	-	1329072..1330058 (+)	987	WP_024699928.1	hypothetical protein	-
QZL39_RS06275	-	1330058..1330771 (+)	714	WP_341655472.1	hypothetical protein	-
QZL39_RS06280	-	1330912..1331178 (+)	267	WP_021449297.1	DksA/TraR family C4-type zinc finger protein	-
QZL39_RS06285	bioA	1331248..1332528 (-)	1281	WP_023585427.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47622.79 Da
• Isoelectric Point: 5.6777

>NTDB_id=836842 QZL39_RS06260 WP_308390836.1 1326298..1327587(+) (rarA) [Vibrio parahaemolyticus strain I14B]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSEQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=836842 QZL39_RS06260 WP_308390836.1 1326298..1327587(+) (rarA) [Vibrio parahaemolyticus strain I14B]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGTGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTAACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCTCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCGAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (169-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385