Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNK01_RS08285 Genome accession   NZ_CP126128
Coordinates   1691430..1693922 (+) Length   830 a.a.
NCBI ID   WP_284030236.1    Uniprot ID   -
Organism   Desemzia incerta strain EGm139     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686430..1698922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK01_RS08270 (QNK01_08270) - 1688086..1688895 (+) 810 WP_284029008.1 hypothetical protein -
  QNK01_RS08275 (QNK01_08275) - 1689165..1690544 (-) 1380 WP_284029009.1 metallophosphoesterase -
  QNK01_RS08280 (QNK01_08280) - 1690707..1691390 (+) 684 WP_284029010.1 tetratricopeptide repeat protein -
  QNK01_RS08285 (QNK01_08285) recD2 1691430..1693922 (+) 2493 WP_284030236.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNK01_RS08290 (QNK01_08290) - 1693963..1694919 (-) 957 WP_284029011.1 diacylglycerol kinase family protein -
  QNK01_RS08295 (QNK01_08295) zwf 1695101..1696555 (+) 1455 WP_284029012.1 glucose-6-phosphate dehydrogenase -
  QNK01_RS08300 (QNK01_08300) - 1696616..1697251 (+) 636 WP_284029013.1 hypothetical protein -

Sequence

Protein


Download         Length: 830 a.a.        Molecular weight: 92905.55 Da        Isoelectric Point: 4.6623

>NTDB_id=836814 QNK01_RS08285 WP_284030236.1 1691430..1693922(+) (recD2) [Desemzia incerta strain EGm139]
MQEELFDASAEPYIVGGIKAVFYQNPSNFYKVLLVQITETNCDYKEQEIVVTGSFGQIQEEEVYRFYGKLVDHPKFGMQF
TSTRYHQEKPTSIEGLIHYLSGDKFPGIGEKTAEAIVDALGEEAIDRINADPDVLVQIPQLNQKKRDTIVEVIQQSNGME
KIIIGLNQYGFGSQLAYSIYQTYQEKTLEIIQENPYQLLEDVEHVGFKKADAIAEQIGIKADSPMRIKAAILFSLNELCL
SNGDTYTYAEQLLTKTIEVLESSRSFLIEPESVADEIVHLIDENKLIEDNGKLYIRSLYAAEWGITASIHHMLENSSKIK
YSQDIDKEIKIVEKTFNIQYGKSQKEAIKKAVQSPIFILTGGPGTGKTTVLNGIVTLYAELNGLSLDVEDYTEEKPFPIL
LAAPTGRAAKKMNESTGLPSSTIHRLLGLNGSENQAGEQAEKELSGGLLIVDEMSMVDTWLANQLLRAVPSGMQVLLVGD
KDQLPSVGPGQVLHDLLASQKVPSMELNEIYRQGDGSSIITLAHSIKNGELPADFLKPQRDRSFFNCSTFQIEEVIRQVV
TKAKAKGFTAQDIQVLAPMYRGPAGIDALNKMLQDIFNPNDTGRRKEVNFNNKVYRIGDKVLQLVNYPEMNVFNGDMGEI
VGITYAKETEDKVDEIVIRFDANEVTYKRSEWNKITLAYCCSIHKSQGSEFKMVILPMVKNYHRMLRRDLTYTAITRASE
LLILCGEPQAFHESVMKSSADRLTTLKERIMGEEESIESSTDENATKITVVPESKESVSSVTDQPVQLSMDQERESSQNG
LPKEYKLTVSKVNNEEVDPMIGMEGVTPYQ

Nucleotide


Download         Length: 2493 bp        

>NTDB_id=836814 QNK01_RS08285 WP_284030236.1 1691430..1693922(+) (recD2) [Desemzia incerta strain EGm139]
ATTCAAGAAGAATTATTTGATGCATCTGCAGAACCATATATCGTTGGAGGGATTAAAGCTGTATTTTACCAAAACCCCTC
GAACTTTTATAAAGTTCTGTTAGTTCAAATTACCGAAACCAATTGCGACTATAAAGAACAAGAAATCGTTGTTACAGGAA
GTTTTGGTCAGATCCAAGAAGAAGAAGTGTACCGTTTTTATGGCAAGTTAGTAGATCATCCGAAATTTGGGATGCAATTT
ACTTCTACTCGTTACCATCAAGAAAAACCGACTTCGATTGAAGGGCTGATTCATTATTTGTCGGGAGATAAATTTCCGGG
AATCGGAGAGAAAACAGCGGAAGCCATTGTAGACGCCTTGGGAGAAGAAGCCATTGATCGTATCAACGCTGATCCTGATG
TGTTGGTACAGATTCCGCAATTGAATCAAAAGAAACGAGACACGATCGTAGAAGTGATCCAACAAAGCAACGGAATGGAA
AAAATCATTATCGGATTGAATCAATATGGATTCGGTAGTCAGTTGGCTTATAGCATTTACCAAACCTACCAAGAAAAGAC
ATTAGAGATCATCCAAGAAAATCCATATCAGTTATTAGAAGATGTCGAGCATGTCGGATTTAAAAAAGCTGATGCCATAG
CGGAACAAATAGGAATCAAGGCGGATTCTCCAATGCGTATCAAAGCAGCCATTCTCTTTTCATTGAACGAGCTGTGTTTA
TCGAATGGAGATACGTATACGTATGCAGAACAATTATTGACCAAAACGATTGAAGTGTTAGAATCCAGCCGTTCTTTTTT
GATTGAACCAGAAAGCGTTGCGGATGAAATAGTTCATTTGATCGATGAAAACAAGTTGATCGAAGACAATGGGAAGTTGT
ACATCAGATCATTGTATGCTGCTGAATGGGGAATTACGGCTTCGATTCATCATATGCTGGAAAATTCTTCTAAAATAAAA
TACAGTCAAGATATTGATAAAGAAATCAAAATAGTCGAAAAAACGTTCAATATTCAGTATGGAAAGTCTCAAAAAGAAGC
CATCAAAAAAGCGGTCCAATCGCCTATTTTCATATTGACAGGTGGTCCAGGAACAGGGAAAACAACCGTGTTGAATGGTA
TTGTTACCTTATACGCTGAATTGAACGGTTTGTCTTTAGATGTTGAAGATTATACAGAAGAGAAACCTTTTCCGATTTTG
CTGGCAGCTCCAACAGGAAGAGCGGCTAAAAAGATGAATGAATCGACCGGTCTTCCCAGCAGCACGATCCATCGTTTGTT
GGGATTGAATGGAAGTGAAAACCAAGCAGGAGAACAAGCTGAAAAAGAGTTGTCGGGTGGATTGTTGATCGTTGATGAAA
TGTCGATGGTCGATACTTGGCTGGCGAATCAATTGTTACGGGCTGTCCCAAGCGGCATGCAAGTCTTACTGGTTGGAGAT
AAAGACCAGCTGCCATCAGTTGGACCTGGCCAAGTGCTGCACGATTTACTGGCTAGTCAAAAAGTTCCAAGCATGGAACT
TAATGAAATTTATCGACAAGGTGATGGTTCTTCAATCATCACTTTAGCTCACAGCATAAAAAACGGCGAACTGCCAGCTG
ATTTTCTCAAGCCACAAAGAGATCGCTCGTTTTTCAATTGCTCGACGTTCCAAATTGAAGAAGTCATTCGGCAAGTAGTC
ACCAAAGCAAAAGCTAAAGGGTTTACTGCTCAAGACATCCAAGTATTAGCGCCGATGTACCGAGGTCCTGCAGGAATCGA
TGCGTTGAACAAAATGCTGCAAGACATTTTTAATCCGAATGATACGGGTCGTCGAAAAGAAGTCAATTTCAACAACAAAG
TGTATCGTATAGGGGATAAAGTGTTGCAGCTGGTCAACTATCCGGAAATGAATGTGTTCAATGGAGATATGGGTGAAATC
GTCGGAATCACTTACGCAAAAGAAACAGAAGACAAAGTCGATGAGATCGTCATTCGTTTTGATGCCAATGAAGTGACCTA
TAAACGGAGCGAATGGAATAAAATTACGTTGGCTTACTGTTGCTCGATCCATAAATCGCAAGGAAGCGAATTTAAAATGG
TCATCTTACCGATGGTGAAAAACTATCATCGAATGTTGAGACGAGATTTAACGTATACTGCGATCACCAGAGCCAGCGAA
TTGTTGATTTTATGCGGCGAACCGCAAGCCTTTCACGAAAGTGTGATGAAGTCATCTGCTGATCGTTTAACGACGCTGAA
AGAGCGAATCATGGGTGAAGAAGAGAGTATAGAATCCTCAACGGATGAGAATGCGACAAAAATCACTGTTGTGCCAGAAT
CAAAAGAATCTGTTTCATCTGTTACAGACCAGCCAGTACAACTATCGATGGATCAAGAAAGGGAATCCTCTCAAAATGGA
TTACCAAAAGAATACAAATTGACTGTATCAAAAGTGAATAATGAAGAAGTCGATCCAATGATCGGAATGGAAGGCGTAAC
ACCTTATCAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-725)

AAA domain (AAA_30)

(340-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-246)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.577

99.639

0.494