Detailed information NTG0836775

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH686_RS16105
• Genome accession: NZ_CP126126
• Coordinates: 3445591..3446463 (-)
• Length: 290 a.a.
• NCBI ID: WP_289533911.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SO81
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3440591..3451463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH686_RS16060 (OH686_16450)	-	3440616..3441914 (-)	1299	WP_289533896.1	NAD(P)/FAD-dependent oxidoreductase	-
OH686_RS16065 (OH686_16455)	-	3441975..3442148 (-)	174	WP_289533898.1	DUF3094 domain-containing protein	-
OH686_RS16070 (OH686_16460)	-	3442190..3442672 (-)	483	WP_289533900.1	MOSC domain-containing protein	-
OH686_RS16075 (OH686_16465)	-	3442669..3443295 (-)	627	WP_289533903.1	DUF1780 domain-containing protein	-
OH686_RS16080 (OH686_16470)	-	3443341..3443790 (+)	450	WP_289539005.1	GNAT family N-acetyltransferase	-
OH686_RS16085 (OH686_16475)	-	3443787..3444482 (+)	696	WP_289533905.1	energy-coupling factor ABC transporter permease	-
OH686_RS16090 (OH686_16480)	-	3444576..3444791 (+)	216	WP_289533907.1	hypothetical protein	-
OH686_RS16095 (OH686_16485)	yacG	3444792..3444986 (-)	195	WP_137970913.1	DNA gyrase inhibitor YacG	-
OH686_RS16100 (OH686_16490)	coaE	3444983..3445594 (-)	612	WP_289533909.1	dephospho-CoA kinase	-
OH686_RS16105 (OH686_16495)	pilD	3445591..3446463 (-)	873	WP_289533911.1	A24 family peptidase	Machinery gene
OH686_RS16110 (OH686_16500)	pilC	3446467..3447684 (-)	1218	WP_289533913.1	type II secretion system F family protein	Machinery gene
OH686_RS16115 (OH686_16505)	pilB	3447691..3449391 (-)	1701	WP_289533915.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OH686_RS16120 (OH686_16510)	-	3449568..3450047 (-)	480	WP_289533917.1	pilin	-
OH686_RS16125 (OH686_16515)	tfpZ	3450367..3451116 (+)	750	WP_289533919.1	TfpX/TfpZ family type IV pilin accessory protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32253.35 Da
• Isoelectric Point: 7.2558

>NTDB_id=836775 OH686_RS16105 WP_289533911.1 3445591..3446463(-) (pilD) [Pseudomonas sp. SO81]
MAVVDFLAGNLPAFVLIATLLGLLVGSFLNVVIYRLPVMMQRDWRQQAREILELPEEPKQDTFNLILPNSCCPHCGHQIR
PWENIPVVSYLFLRGKCSGCKTRISKRYPLVELACGLLSGYVAFHYGFGWQAAGMLMLTWGLLAMSMIDCDHQLLPDALV
LPLLWLGLIANLFGVFTSLEDALWGAIAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMLRLRNQETSTPIPFGPYLAIAGWIALLWGDQITGTYLHFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=836775 OH686_RS16105 WP_289533911.1 3445591..3446463(-) (pilD) [Pseudomonas sp. SO81]
ATGGCAGTAGTAGATTTTCTGGCCGGCAATTTGCCGGCCTTTGTTTTAATAGCAACCCTGCTCGGCCTGCTAGTAGGCAG
CTTCCTCAACGTAGTGATCTACCGCCTGCCAGTCATGATGCAACGCGACTGGCGTCAGCAGGCACGAGAGATTCTCGAAC
TGCCTGAGGAGCCCAAGCAGGACACTTTCAACCTAATCCTGCCGAACTCCTGCTGCCCCCACTGCGGCCATCAGATTCGC
CCTTGGGAGAACATCCCGGTGGTGAGTTACCTGTTCCTACGCGGAAAGTGCTCTGGCTGTAAGACGCGGATCAGTAAGCG
CTATCCGCTGGTTGAGCTGGCTTGTGGTCTGCTGTCTGGCTATGTGGCGTTTCACTACGGCTTCGGCTGGCAGGCGGCCG
GTATGCTGATGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACTGCGATCACCAGCTGCTGCCAGATGCTTTGGTG
CTTCCGCTGCTATGGCTGGGTCTGATTGCCAACCTCTTCGGTGTTTTCACCAGCCTGGAGGATGCCCTGTGGGGTGCCAT
CGCCGGCTACCTGAGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACTGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGATTCTACCGCTGACCATCCTGCTCTCCTCGCTGGTCGGC
GCCGTGCTCGGGGTAATCATGCTGCGCCTGCGCAATCAAGAGACCAGCACGCCCATCCCCTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATCGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTGCATTTCGCCGGTTTTAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.777	94.138	0.534
pilD	Vibrio campbellii strain DS40M4	56.41	94.138	0.531
pilD	Acinetobacter baumannii D1279779	52.817	97.931	0.517
pilD	Acinetobacter nosocomialis M2	52.465	97.931	0.514
pilD	Neisseria gonorrhoeae MS11	53.16	92.759	0.493