Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   U7118_RS16235 Genome accession   NZ_CP141283
Coordinates   2977276..2978193 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain DKU_09     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2972276..2983193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS16210 (U7118_16210) spx 2972633..2973028 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  U7118_RS16215 (U7118_16215) yjbC 2973209..2973787 (-) 579 Protein_3207 GNAT family N-acetyltransferase -
  U7118_RS16220 (U7118_16220) yjbB 2973951..2975168 (-) 1218 WP_072592593.1 MFS transporter -
  U7118_RS16225 (U7118_16225) oppF 2975276..2976193 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  U7118_RS16230 (U7118_16230) oppD 2976195..2977271 (-) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  U7118_RS16235 (U7118_16235) amiD 2977276..2978193 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  U7118_RS16240 (U7118_16240) oppB 2978197..2979132 (-) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  U7118_RS16245 (U7118_16245) oppA 2979240..2980877 (-) 1638 WP_324271333.1 oligopeptide ABC transporter substrate-binding protein OppA -
  U7118_RS16250 (U7118_16250) trpS 2981621..2982613 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=836760 U7118_RS16235 WP_003232954.1 2977276..2978193(-) (amiD) [Bacillus subtilis strain DKU_09]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=836760 U7118_RS16235 WP_003232954.1 2977276..2978193(-) (amiD) [Bacillus subtilis strain DKU_09]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364