Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   U7118_RS14265 Genome accession   NZ_CP141283
Coordinates   2621776..2622225 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain DKU_09     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2616776..2627225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS14235 (U7118_14235) sepM 2616855..2617880 (-) 1026 WP_003245451.1 protease DdcP Regulator
  U7118_RS14240 (U7118_14240) ylbK 2617882..2618664 (-) 783 WP_003232221.1 patatin family protein -
  U7118_RS14245 (U7118_14245) spoVV 2618845..2620071 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  U7118_RS14250 (U7118_14250) coaD 2620082..2620567 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  U7118_RS14255 (U7118_14255) rsmD 2620572..2621126 (-) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  U7118_RS14260 (U7118_14260) ylbG 2621449..2621721 (-) 273 WP_009967171.1 YlbG family protein -
  U7118_RS14265 (U7118_14265) ylbF 2621776..2622225 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  U7118_RS14270 (U7118_14270) ylbE 2622341..2622580 (-) 240 WP_003232231.1 YlbE-like family protein -
  U7118_RS14275 (U7118_14275) ylbD 2622596..2622994 (-) 399 WP_324271306.1 YlbD family protein -
  U7118_RS14280 (U7118_14280) ylbC 2623226..2624266 (-) 1041 WP_041335865.1 CAP domain-containing protein -
  U7118_RS14285 (U7118_14285) ylbB 2624350..2624796 (-) 447 WP_003221362.1 CBS domain-containing protein -
  U7118_RS14290 (U7118_14290) ylbA 2624936..2625298 (+) 363 WP_014479712.1 YugN family protein -
  U7118_RS14295 (U7118_14295) ctaG 2625330..2626223 (-) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  U7118_RS14300 (U7118_14300) ctaF 2626251..2626583 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  U7118_RS14305 (U7118_14305) ctaE 2626586..2627209 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=836744 U7118_RS14265 WP_003221370.1 2621776..2622225(-) (ylbF) [Bacillus subtilis strain DKU_09]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=836744 U7118_RS14265 WP_003221370.1 2621776..2622225(-) (ylbF) [Bacillus subtilis strain DKU_09]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAATTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTCTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1