Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QLQ22_RS18390 Genome accession   NZ_CP126116
Coordinates   3691343..3693718 (-) Length   791 a.a.
NCBI ID   WP_223436895.1    Uniprot ID   -
Organism   Metabacillus sp. CT-WN-B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3686343..3698718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ22_RS18375 (QLQ22_18375) - 3689053..3690114 (-) 1062 WP_284015305.1 AI-2E family transporter -
  QLQ22_RS18380 (QLQ22_18380) - 3690634..3690825 (-) 192 WP_070879785.1 hypothetical protein -
  QLQ22_RS18385 (QLQ22_18385) - 3690840..3691340 (-) 501 WP_284015306.1 PRC-barrel domain-containing protein -
  QLQ22_RS18390 (QLQ22_18390) recD2 3691343..3693718 (-) 2376 WP_223436895.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QLQ22_RS18395 (QLQ22_18395) - 3693748..3694401 (-) 654 WP_252207220.1 tetratricopeptide repeat protein -
  QLQ22_RS18400 (QLQ22_18400) mnmA 3694480..3695595 (-) 1116 WP_252207221.1 tRNA 2-thiouridine(34) synthase MnmA -
  QLQ22_RS18405 (QLQ22_18405) - 3695622..3696764 (-) 1143 WP_284015307.1 cysteine desulfurase family protein -
  QLQ22_RS18410 (QLQ22_18410) - 3696780..3697196 (-) 417 WP_223436903.1 Rrf2 family transcriptional regulator -
  QLQ22_RS18415 (QLQ22_18415) - 3697215..3697886 (-) 672 WP_223436905.1 YitT family protein -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89275.42 Da        Isoelectric Point: 5.0720

>NTDB_id=836707 QLQ22_RS18390 WP_223436895.1 3691343..3693718(-) (recD2) [Metabacillus sp. CT-WN-B3]
MQQKADLFQEQERFLKGKIITVIYQNDQNHYTVLKTEVLETSENYDQKEITVTGYFPLLHEDETYTFFGMLTQHPKFGQQ
FQAEHYRKEIPKTRDGVIQYLSSDLFKGIGRKTAEAIVDVLGEGAISKMMEDPSVLDKVPKLGKDKAKQLLDQLKEHQGL
EQAMISLNQLGFGPQLSMKIYQAYQERTIQVIQENPFQLVKDIEGIGFVRADELGGQMGLGGNHPERIKAACFYTIEHLC
LQEGHTYVSLEQLIIKSMELLNSSKSSGIIETDISEQVIKLAEDKGIIIEEDRAYLPSLFFAEQGLVKSIQRVLLQTEYE
SIFPESEFLLSLGKLEERMKVQYAPTQKEAIQTALMSPMLLLTGGPGTGKTTVIKGIVELYADLHGCSLEQKDYKKEEPF
PISLVAPTGRAAKRMTEATGLPAVTIHRLLKWNGAEGFDHGEDNPIGAKLLIVDEMSMVDTWIANQLFKALPEHIQVIMV
GDEDQLPSVGPGQVLRDLLESEAVPVVRLTDIYRQAEGSSIIELAHDIKKGRLPDNLAAPTKDRSFIRCSGAQVKEVVEK
VISNAIKKGYTARDVQVLAPMYRGPAGIDQLNIMLQQLFNPKAENKREMKFGETVYRSGDKVLQLVNQPESNVYNGDIGE
IVSIFYAKENTEKEDMIVISFDGNEVTYTKSDFNQFTHAFCCSIHKSQGSEFPIVVVPVVKSYYRMLRRNLIYTAITRSK
QFLILCGEQDALLRGIENRDHLSRQTSLKMKLSEKQHMIEELTEELPFDLADAMIGMEGITPYDFMEDNKI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=836707 QLQ22_RS18390 WP_223436895.1 3691343..3693718(-) (recD2) [Metabacillus sp. CT-WN-B3]
GTGCAGCAAAAGGCGGACCTGTTTCAAGAGCAGGAACGGTTTTTAAAAGGAAAGATCATCACGGTTATTTATCAGAATGA
CCAAAACCATTATACCGTCTTAAAGACGGAGGTTCTTGAAACGAGCGAAAATTATGATCAAAAAGAAATAACCGTGACAG
GCTATTTTCCTCTTCTGCATGAAGATGAAACATATACATTCTTTGGGATGCTGACACAGCATCCCAAATTTGGCCAGCAA
TTTCAGGCTGAGCATTACCGGAAAGAAATTCCCAAAACGCGCGACGGTGTAATACAATACCTTTCAAGCGACCTGTTTAA
AGGGATAGGCAGGAAAACAGCTGAAGCGATAGTGGATGTACTTGGAGAAGGCGCAATTTCGAAAATGATGGAAGATCCTT
CTGTGCTTGATAAAGTGCCGAAGCTCGGCAAAGACAAAGCAAAACAGCTGCTTGATCAGCTGAAGGAGCATCAGGGTCTA
GAGCAGGCCATGATTAGTTTAAATCAGCTTGGCTTCGGCCCTCAGCTTTCTATGAAAATTTACCAGGCCTATCAGGAAAG
AACGATCCAAGTGATCCAGGAAAATCCTTTTCAGCTAGTTAAAGATATCGAGGGAATTGGCTTCGTGCGCGCTGATGAGC
TTGGAGGACAAATGGGCCTCGGCGGAAACCATCCTGAGAGGATTAAAGCGGCTTGCTTTTATACAATTGAACATCTTTGC
CTGCAAGAAGGCCATACATATGTTTCACTGGAGCAGTTAATTATAAAATCAATGGAATTGCTGAATTCATCGAAGAGTTC
AGGAATCATTGAAACAGATATCTCAGAGCAAGTGATCAAACTTGCAGAAGATAAAGGAATTATTATTGAAGAAGACAGAG
CTTATCTGCCGTCTCTGTTTTTTGCTGAACAGGGACTTGTGAAAAGTATCCAGCGTGTCCTTTTGCAGACAGAATATGAG
AGCATTTTTCCTGAATCAGAGTTTTTGCTTTCACTCGGGAAACTGGAAGAGAGAATGAAAGTGCAGTACGCCCCGACTCA
AAAAGAAGCCATCCAAACGGCTCTGATGTCTCCTATGCTTCTGCTTACGGGAGGACCTGGTACAGGCAAGACGACCGTTA
TAAAAGGGATTGTTGAGCTTTACGCAGATCTGCATGGCTGTTCGCTTGAGCAAAAAGACTATAAAAAAGAAGAGCCTTTT
CCAATCTCATTAGTTGCTCCGACAGGACGGGCAGCAAAAAGAATGACAGAAGCAACAGGCCTGCCGGCTGTAACGATTCA
CCGGCTGTTAAAGTGGAACGGTGCAGAAGGATTTGATCACGGTGAGGATAACCCGATCGGTGCAAAACTGCTGATTGTTG
ATGAAATGTCGATGGTGGACACTTGGATTGCAAATCAGCTGTTTAAAGCTCTGCCTGAACATATTCAGGTCATAATGGTT
GGAGATGAAGATCAGCTGCCCTCTGTAGGACCTGGTCAAGTACTGCGTGATTTGCTTGAGTCTGAGGCAGTTCCCGTCGT
AAGACTGACGGATATTTATAGACAGGCAGAGGGTTCATCCATAATAGAGCTTGCACATGATATTAAAAAAGGAAGGCTGC
CTGATAATCTGGCTGCACCTACAAAAGACAGATCCTTTATTCGGTGCAGCGGTGCACAGGTAAAAGAAGTGGTTGAGAAA
GTCATATCAAACGCCATCAAAAAAGGATATACAGCCCGAGATGTTCAGGTGCTTGCTCCCATGTACCGCGGGCCTGCTGG
CATAGATCAGCTTAATATTATGCTGCAGCAGCTGTTTAATCCTAAAGCTGAAAACAAAAGAGAAATGAAGTTCGGCGAGA
CTGTATACAGATCGGGTGACAAAGTTCTTCAGCTCGTTAATCAGCCTGAGAGCAATGTTTATAATGGCGATATTGGCGAG
ATTGTGTCCATTTTTTATGCAAAGGAAAACACTGAAAAAGAAGATATGATTGTCATCTCTTTTGATGGCAATGAGGTCAC
ATATACAAAATCAGATTTCAATCAATTTACGCATGCTTTTTGCTGCTCGATCCACAAATCTCAGGGCAGCGAATTTCCGA
TTGTTGTTGTGCCTGTCGTCAAAAGCTATTACAGAATGCTTAGAAGAAACTTAATTTATACGGCCATTACAAGAAGCAAG
CAGTTTTTAATCCTTTGCGGGGAACAAGATGCCCTTTTGCGAGGTATTGAAAACAGAGATCATTTAAGCCGGCAGACCTC
TTTAAAAATGAAGCTTTCAGAAAAACAGCATATGATTGAAGAGCTTACAGAGGAGCTTCCTTTTGATCTTGCTGATGCCA
TGATCGGAATGGAAGGCATTACCCCGTATGACTTTATGGAAGACAACAAAATCTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

69.182

100

0.695