Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH48_RS23175 Genome accession   NZ_CP126115
Coordinates   4685445..4687799 (-) Length   784 a.a.
NCBI ID   WP_283952169.1    Uniprot ID   A0AA95N010
Organism   Neobacillus sp. YX16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4680445..4692799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH48_RS23160 (QNH48_23160) dtd 4682061..4682504 (-) 444 WP_283952168.1 D-aminoacyl-tRNA deacylase -
  QNH48_RS23165 (QNH48_23165) - 4682518..4684713 (-) 2196 WP_095250059.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH48_RS23170 (QNH48_23170) - 4684933..4685445 (-) 513 WP_095250058.1 adenine phosphoribosyltransferase -
  QNH48_RS23175 (QNH48_23175) recJ 4685445..4687799 (-) 2355 WP_283952169.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH48_RS23180 (QNH48_23180) secDF 4687912..4690176 (-) 2265 WP_283952170.1 protein translocase subunit SecDF -
  QNH48_RS23185 (QNH48_23185) - 4690328..4690624 (-) 297 WP_283952171.1 post-transcriptional regulator -
  QNH48_RS23190 (QNH48_23190) spoVB 4690868..4692418 (+) 1551 WP_283952172.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87725.58 Da        Isoelectric Point: 5.3127

>NTDB_id=836654 QNH48_RS23175 WP_283952169.1 4685445..4687799(-) (recJ) [Neobacillus sp. YX16]
MLKSKTRWIVRKSDQQLVETLENELKITPLVASLLINRGLNTVDSARYFLYGKEQFHDPYLLKGMDTAVNRIRQAIENQE
PILIFGDYDADGVSSTTVLMLTLKDLGANVQFYIPNRFTEGYGPNEPAFRSAAESGIKLIITVDTGISAIHEAGIAKELG
LDLIITDHHEPGPVLPEALAIIHPKLPDSIYPFRELAGVGVAFKLAHALYGELPEHLLEIAVIGTIADLVSLKDENRLIV
KKGLEKLKVTKNKGLKAILKVAGVDQQNINEETIGFTLAPRINAVGRLENADMAVDLLLTDDPIEAENLAQEMDELNKTR
QSIVNSITLEAIEEVERNYPIESNSVLVIGKEGWNAGVIGIVASRLVEKYYRPTIVLSFDPEKGLAKGSARSIAGFDLFK
NLSTCRDILPHFGGHPMAAGMTLKLEDVSDLRQRLNLLADEQLTKEDFVPITLLDHQINVEEINLSSLDELNLLAPFGMD
NPKPKVLISNVQISTMRKIGSEQNHLKVLVNDNGANLDGIGFGLGQLVDHISPASKISIIGELAINEWNNIRKPQIFIQD
VAVESWQLFDHRGVKRIHSMVNTIPKEKRTFIIFNKEQLDKMDPALTSEAILIQNEADAKAFDSHQANVVLVDLPPSKDI
LCHLFNGRQPARIYAYFHKESSDFFSTLPTRDHFKWFYGLLLKKGPIDLGRHGDEIAKHRGWSTETITFMSKVFSELDFV
TINNGFITLNKQSQKRDLTDSITYQMKQSQYGLERDLLFSSFQALKSWFDEVIEESVQIEEAIK

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=836654 QNH48_RS23175 WP_283952169.1 4685445..4687799(-) (recJ) [Neobacillus sp. YX16]
ATGTTAAAGTCGAAAACTAGATGGATTGTTCGTAAATCTGATCAACAACTAGTAGAAACTCTCGAAAATGAATTAAAAAT
TACGCCACTTGTTGCGTCGCTGCTTATCAACCGCGGATTAAATACCGTTGATTCTGCACGGTATTTTTTATATGGAAAAG
AGCAATTTCATGACCCTTATCTATTAAAAGGCATGGATACAGCCGTAAACAGAATTCGGCAGGCAATAGAAAATCAAGAA
CCTATATTAATATTTGGAGATTATGATGCAGATGGTGTGAGCAGTACGACCGTATTAATGCTTACGCTCAAGGATCTGGG
GGCTAATGTCCAATTTTATATACCCAATCGTTTTACAGAAGGATATGGTCCGAATGAACCAGCCTTTCGGAGTGCAGCTG
AATCTGGAATAAAATTAATTATTACTGTAGATACAGGTATTTCTGCTATACACGAAGCAGGTATTGCAAAGGAACTTGGT
CTCGACTTAATTATCACGGATCACCATGAACCTGGTCCTGTTTTACCGGAAGCATTGGCGATTATTCATCCTAAACTTCC
AGATAGTATTTATCCTTTTCGTGAACTTGCTGGGGTAGGTGTGGCCTTTAAATTAGCTCATGCCCTTTATGGAGAACTTC
CAGAACATTTACTTGAAATTGCTGTTATTGGTACCATCGCAGATTTGGTTTCGTTAAAAGACGAAAATCGTCTTATTGTC
AAAAAAGGTTTGGAAAAGCTTAAAGTTACCAAAAATAAAGGTCTAAAAGCTATTTTAAAAGTAGCAGGTGTAGATCAACA
GAACATTAACGAAGAAACAATCGGATTTACGCTAGCGCCAAGAATCAATGCTGTTGGCAGATTAGAAAATGCCGATATGG
CTGTAGACCTTTTGCTTACAGATGACCCTATTGAAGCAGAAAACTTAGCACAAGAAATGGACGAATTAAATAAAACAAGG
CAGTCAATTGTCAACTCTATTACACTTGAAGCCATTGAAGAGGTTGAAAGAAACTATCCTATTGAATCGAATTCAGTACT
CGTGATTGGTAAAGAAGGCTGGAATGCTGGTGTGATTGGCATCGTTGCTTCTAGATTAGTTGAAAAGTACTACCGTCCAA
CAATTGTCCTTAGTTTTGACCCTGAAAAAGGTTTGGCCAAGGGTTCAGCCCGAAGTATTGCAGGTTTTGATTTATTTAAA
AATCTGTCGACATGCCGTGATATCCTTCCGCATTTTGGCGGACATCCTATGGCTGCTGGAATGACGCTAAAGCTAGAGGA
TGTTTCAGATCTTCGTCAAAGATTAAATCTTTTGGCGGATGAGCAGTTAACAAAAGAAGATTTTGTTCCAATTACTTTAC
TCGATCATCAAATAAATGTGGAAGAAATTAACTTATCCTCATTAGATGAATTAAATCTTCTTGCTCCATTTGGAATGGAC
AATCCGAAGCCAAAGGTCTTAATTAGTAATGTCCAAATATCCACGATGAGAAAGATTGGTTCTGAACAAAATCATTTGAA
AGTATTGGTAAATGATAATGGTGCTAACCTAGATGGGATTGGGTTCGGACTCGGACAGTTAGTGGACCATATTTCACCAG
CTTCAAAAATTTCGATTATTGGTGAATTAGCTATCAATGAGTGGAATAATATCCGTAAACCACAAATTTTTATTCAGGAT
GTTGCCGTTGAATCCTGGCAATTATTCGATCATCGCGGGGTCAAACGGATTCACTCGATGGTGAATACCATCCCGAAGGA
AAAACGGACATTTATTATTTTTAATAAAGAACAGCTTGATAAAATGGATCCGGCTTTAACGAGTGAGGCAATACTGATTC
AAAATGAGGCCGATGCGAAAGCCTTCGATTCCCATCAAGCCAATGTTGTACTCGTTGACCTGCCGCCATCAAAGGACATT
CTTTGTCACTTATTTAATGGAAGGCAGCCTGCGCGGATTTATGCCTATTTCCATAAAGAATCGAGTGATTTCTTCAGTAC
TCTGCCAACAAGAGACCATTTTAAATGGTTTTATGGTTTGCTATTAAAAAAGGGTCCGATTGATTTAGGCCGTCATGGGG
ATGAAATTGCCAAGCACCGCGGCTGGTCGACAGAAACGATAACCTTTATGTCAAAGGTGTTTTCTGAACTAGATTTTGTT
ACAATAAACAATGGATTTATTACTTTGAATAAACAATCACAAAAGCGTGACCTAACTGACTCGATTACCTACCAAATGAA
ACAGTCTCAATATGGACTTGAAAGAGATTTATTATTTTCATCCTTTCAAGCATTGAAAAGCTGGTTTGATGAGGTTATTG
AGGAATCAGTTCAAATTGAGGAGGCAATAAAGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-225)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(313-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.216

100

0.554