Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QNH48_RS11320 Genome accession   NZ_CP126115
Coordinates   2359458..2361221 (+) Length   587 a.a.
NCBI ID   WP_283954979.1    Uniprot ID   A0AA95N2U1
Organism   Neobacillus sp. YX16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2354458..2366221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH48_RS11295 (QNH48_11295) - 2354540..2356825 (+) 2286 WP_283954975.1 ribonucleoside-diphosphate reductase subunit alpha -
  QNH48_RS11300 (QNH48_11300) - 2356854..2357897 (+) 1044 WP_283955748.1 ribonucleotide-diphosphate reductase subunit beta -
  QNH48_RS11305 (QNH48_11305) - 2357878..2358351 (+) 474 WP_283954976.1 flavodoxin domain-containing protein -
  QNH48_RS11310 (QNH48_11310) - 2358440..2358757 (-) 318 WP_283954977.1 replicative helicase loader/inhibitor -
  QNH48_RS11315 (QNH48_11315) - 2358937..2359383 (+) 447 WP_283954978.1 MarR family winged helix-turn-helix transcriptional regulator -
  QNH48_RS11320 (QNH48_11320) rcrP 2359458..2361221 (+) 1764 WP_283954979.1 ABC transporter ATP-binding protein Regulator
  QNH48_RS11325 (QNH48_11325) rcrQ 2361241..2363028 (+) 1788 WP_283955749.1 ABC transporter ATP-binding protein Regulator
  QNH48_RS11330 (QNH48_11330) - 2363412..2365418 (-) 2007 WP_283954980.1 alpha-galactosidase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64991.65 Da        Isoelectric Point: 6.3274

>NTDB_id=836641 QNH48_RS11320 WP_283954979.1 2359458..2361221(+) (rcrP) [Neobacillus sp. YX16]
MLKIFKYLQKKEYLLIMFSLVFIVTQVYLDLKLPDYMHEITMLVQTEGSKMSDVLLQGGYMLLCAVGSMIASIIVGFFAA
KVAAGFSVRLRAMVFEKTMSFSIEEINGFSTASLITRSTNDITQIQLLIAMGLQVIVKAPILAVWAVFKIMGKSWQWSAA
TGFAVLFLVFMLCILIFVAMPKFKIIQSLTDNLNRVTRENLSGIRVVHAYNASNYQEKKFEEANSALTNTNLFTSRAMAI
MMPTMGIIMSGMGLAIYWIGAFLINGAAQTDKLSLFSDMIVFSSYAMQVIMAFMMLSFVFIMLPRASVSAKRIKEVLDTE
ATIIDGNVIEGKTGLSGEIEFRNVSFKYPDAAQYILRNISFTASKGETVAFIGSTGSGKSTLLNLIPRYFDATEGEVLVD
GVNVKQYTQDSLRKKIGYVSQKAVLFSGTVTSNVAYGDNGEISENESVVKKAIDIAQGTEFVEKMEDQYNGAIAQGGTNI
SGGQKQRLSIARAVYREPEIYIFDDSFSALDYKTDRVLRSELKKETKDATTLIVGQRIGTIKDADRIVVLNEGEVVGIGT
HNELMQNCSVYQEIAYSQLSKEELEIG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=836641 QNH48_RS11320 WP_283954979.1 2359458..2361221(+) (rcrP) [Neobacillus sp. YX16]
ATGTTGAAAATTTTTAAATATCTACAGAAAAAAGAATACCTGTTAATTATGTTTAGTTTGGTATTTATTGTGACACAGGT
GTATCTTGATTTGAAGCTTCCTGATTATATGCATGAAATCACCATGCTTGTACAGACGGAAGGAAGTAAGATGAGCGATG
TTCTCCTTCAAGGCGGATATATGCTTTTGTGTGCTGTCGGTAGTATGATCGCTTCTATCATTGTTGGTTTCTTCGCAGCT
AAAGTCGCTGCCGGTTTTTCTGTTCGCCTTAGAGCAATGGTGTTCGAGAAGACGATGTCTTTTTCAATTGAAGAAATCAA
CGGCTTTTCAACAGCAAGTCTGATTACCCGATCAACGAATGATATCACCCAAATTCAACTACTTATTGCAATGGGACTAC
AAGTAATCGTAAAGGCCCCGATACTAGCTGTTTGGGCAGTTTTTAAGATTATGGGGAAAAGCTGGCAATGGTCGGCAGCT
ACAGGATTTGCTGTTTTATTCCTTGTTTTCATGCTGTGTATTCTTATTTTTGTTGCCATGCCAAAATTCAAAATTATTCA
GAGTTTAACAGATAACTTGAATCGTGTAACAAGAGAAAACTTGTCAGGTATTCGTGTTGTTCATGCCTATAACGCTAGTA
ATTATCAGGAGAAGAAATTTGAAGAAGCCAACAGTGCGCTTACAAATACAAATCTCTTCACTAGCCGGGCGATGGCGATT
ATGATGCCGACTATGGGGATCATCATGTCAGGTATGGGTCTAGCAATCTATTGGATTGGTGCCTTCTTAATTAATGGAGC
TGCACAAACGGATAAATTATCCTTGTTCTCGGATATGATTGTATTTTCGTCTTACGCCATGCAGGTTATTATGGCCTTTA
TGATGCTTTCATTTGTGTTTATCATGCTTCCACGTGCTTCTGTTTCTGCAAAACGTATTAAAGAAGTGCTTGATACCGAA
GCAACAATCATTGATGGAAACGTGATAGAAGGGAAAACGGGTCTTTCTGGAGAAATTGAATTCCGAAATGTAAGTTTTAA
ATATCCTGATGCAGCACAGTATATCCTTCGAAATATAAGTTTCACTGCTAGTAAAGGTGAAACGGTAGCATTTATTGGCT
CAACAGGCAGTGGTAAAAGTACACTACTCAACCTAATTCCTCGCTATTTTGATGCAACAGAAGGGGAAGTGTTGGTGGAT
GGTGTGAACGTTAAACAATATACCCAGGATTCGTTACGCAAAAAAATCGGTTATGTATCGCAAAAAGCAGTGTTATTCAG
CGGTACAGTTACTTCGAATGTTGCTTATGGGGACAATGGGGAAATTTCAGAAAATGAATCAGTTGTCAAAAAGGCCATTG
ATATTGCACAGGGAACTGAATTTGTTGAAAAGATGGAAGACCAGTATAACGGTGCTATTGCACAAGGCGGTACCAATATT
TCTGGCGGCCAAAAACAAAGATTATCAATCGCAAGGGCAGTTTATAGAGAACCAGAAATTTATATTTTTGATGATTCATT
CTCAGCGCTTGATTATAAGACCGATCGAGTACTGCGGTCCGAACTCAAAAAAGAAACAAAAGATGCCACTACATTAATTG
TGGGCCAGCGTATCGGTACCATTAAGGATGCAGATCGGATCGTGGTACTTAACGAAGGGGAAGTAGTTGGCATTGGAACA
CATAATGAGTTGATGCAAAATTGCAGTGTTTATCAGGAGATTGCTTATTCTCAGTTGTCAAAGGAGGAGCTTGAAATTGG
TTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(52-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.755

100

0.538