Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   U5640_RS34030 Genome accession   NZ_CP141223
Coordinates   7413653..7416652 (+) Length   999 a.a.
NCBI ID   WP_340381055.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7408653..7421652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - uvrA 7413653..7416652 (+) 3000 - - Machinery gene

Sequence

Protein


Download         Length: 999 a.a.        Molecular weight: 109493.24 Da        Isoelectric Point: 7.1324

>NTDB_id=836641 U5640_RS34030 WP_340381055.1 7413653..7416652(+) (uvrA) [Streptomyces sp. SS7]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPISRQSPQAIVDRVLELPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLSSPPTLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMFSEHLYCPYDDLSFEELEPRSFSFNSPFGACPECTGIGTRMEVDPELIVPDEDKSLDEGAIHPWSHGHTK
DYFGRLTGALADALGFRTDIPFAGLPQRAKKALLYGHKTQIEVRYRNRYGRERVYTTPFEGAVPFVKRRHGEAESDASRE
RFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIAEVSAMSISDCAEFLGELKLNARDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WVVDIGPGAGEHGGKVVHSGSLKELLANAESQTGQYLAGKKSIPLPDIRRPRDPSRQLTVHGARENNLQDIDVSFPLGVF
TAVTGVSGSGKSTLVNDILYTHLARELNGARNVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLFA
ETTEAKVRGYQPGRFSFNVKGGRCENCAGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIADVLNMPIEEA
ADFFEAVPAIARHLNTLKDVGLGYVRLGQSATTLSGGEAQRVKLASELQRRSTGRTVYVLDEPTTGLHFEDISKLLKVLA
GLVDKGNTVIVIEHNLDVIKTADWVVDMGPEGGAGGGLVVAEGTPEEVAGVPASHTGKFLREILGADRVSDAAPAKAPRR
TAAKKTAAARTADGPAAKTATAAARKAAPAKRTTRARKA

Nucleotide


Download         Length: 3000 bp        

>NTDB_id=836641 U5640_RS34030 WP_340381055.1 7413653..7416652(+) (uvrA) [Streptomyces sp. SS7]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTCAAGAATGTCTCGCTCGACCTGCCGCGCGACTCGCT
CATCGTCTTCACGGGCCTGTCGGGGTCGGGCAAGTCCTCGCTGGCCTTCGACACCATCTTCGCCGAGGGGCAGCGGCGCT
ACGTGGAGTCGCTCTCCTCGTACGCCCGCCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATCGAAGGTCTC
TCGCCGGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTGCGGCTGCTCTTCGCGCGCATCGGCAAGCCGCACTGTCCCGAGTGCGGCCGCCCGATCTCCCGCCAGTCGCCGC
AGGCCATCGTCGACCGGGTCCTGGAGCTGCCCGAGGGCAGCCGCTTCCAGGTGCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGGGAGTTCGTCGACCTCTTCGCCGACCTCCAGACCAAGGGCTACTCCCGCGCGCGCGTGGACGGCGAGACGATCCAGCT
CTCCAGCCCGCCCACGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGCCTCACGGTCAAGGACTCCG
CCAAGCGCCGCCTCACCGACTCCGTGGAGACCGCCCTCGGTCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGCATGTTCTCGGAGCACCTCTACTGCCCGTACGACGACCTGTCCTTCGAGGAGCT
GGAGCCCCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGAGTGCACCGGCATCGGCACGCGCATGGAGGTCG
ACCCCGAGCTGATCGTCCCGGACGAGGACAAGTCCCTCGACGAGGGTGCCATCCACCCCTGGTCGCACGGCCACACCAAG
GACTACTTCGGCCGTCTGACCGGCGCCCTCGCGGACGCGCTGGGCTTCCGGACCGACATCCCCTTCGCGGGGCTGCCGCA
GCGCGCCAAGAAGGCCCTGCTGTACGGCCACAAGACCCAGATCGAGGTCCGCTACCGCAACCGCTACGGCCGCGAGCGCG
TGTACACCACGCCCTTCGAGGGCGCCGTCCCGTTCGTCAAGCGCCGGCACGGCGAGGCGGAGAGCGACGCCAGCCGCGAG
CGCTTCGAGGGCTATATGCGCGAGGTGCCCTGCCCCACCTGCGAGGGCACGCGCCTGAAGCCGATCGTCCTCGCGGTCAC
CGTCATGGAGAAGTCGATCGCCGAGGTCTCCGCGATGTCCATCAGCGACTGCGCGGAGTTCCTGGGCGAGCTGAAGCTCA
ACGCCCGTGACAAGAAGATCGCCGAACGCGTCCTGAAGGAGGTCAACGAACGACTGCGCTTCCTGGTCGACGTCGGCCTC
GACTACCTCTCCCTCAACCGCGCGGCCGGCACCCTCTCCGGCGGCGAGGCCCAGCGCATCCGCCTGGCCACCCAGATCGG
CTCGGGACTCGTCGGCGTGCTCTACGTCCTCGACGAGCCCTCCATCGGCCTGCACCAGCGCGACAACCACCGGCTGATCG
AGACCCTGGTCCGGCTGCGCGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCCGAC
TGGGTCGTCGACATCGGCCCCGGCGCGGGCGAGCACGGCGGCAAGGTCGTGCACAGCGGTTCCCTGAAGGAGCTGCTCGC
CAACGCCGAGTCGCAGACCGGTCAGTACCTGGCCGGCAAGAAGTCGATCCCGCTGCCGGACATCCGGCGCCCGCGCGACC
CCTCCCGGCAGCTCACCGTGCACGGCGCCCGCGAGAACAACCTCCAGGACATCGACGTGTCCTTCCCGCTGGGCGTGTTC
ACGGCCGTCACCGGAGTCTCCGGCTCCGGCAAGTCCACCCTGGTCAACGACATCCTGTACACCCACCTGGCCCGCGAGCT
GAACGGCGCGAGGAACGTCCCGGGACGGCACACCCGGGTGGACGGCGACGACCTCGTCGACAAGGTCGTGCACGTCGACC
AGTCGCCCATCGGCCGTACCCCCCGCTCCAACCCGGCCACGTACACCGGTGTCTTCGACCACGTCCGCAAGCTGTTCGCC
GAGACCACCGAGGCGAAGGTCCGCGGCTACCAGCCCGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CGCGGGCGACGGCACGATCAAGATCGAGATGAACTTCCTCCCGGACGTCTACGTCCCGTGCGAGGTCTGCCACGGCGCCC
GGTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCGGACGTGCTGAACATGCCGATCGAGGAGGCC
GCGGACTTCTTCGAGGCGGTCCCGGCGATCGCCCGCCACCTCAACACCCTGAAGGACGTCGGTCTCGGCTACGTCCGGCT
CGGACAGTCCGCGACCACCCTCTCCGGCGGTGAGGCCCAGCGTGTCAAGCTCGCCAGCGAGCTCCAGCGCCGCTCCACCG
GCCGCACGGTCTACGTCCTGGACGAGCCGACCACGGGCCTGCACTTCGAGGACATCAGCAAGCTCCTCAAGGTCCTCGCG
GGTCTCGTCGACAAGGGCAACACGGTCATCGTCATCGAGCACAACCTCGACGTGATCAAGACCGCCGACTGGGTCGTCGA
CATGGGCCCCGAGGGCGGCGCGGGCGGTGGCCTGGTCGTCGCCGAGGGCACACCGGAGGAGGTCGCCGGAGTCCCGGCGA
GCCACACCGGCAAGTTCCTGCGCGAGATCCTCGGCGCCGACCGCGTCAGCGACGCGGCGCCGGCGAAGGCCCCGCGCAGA
ACGGCGGCCAAGAAGACGGCCGCGGCAAGGACCGCCGACGGCCCGGCGGCGAAGACGGCCACCGCGGCGGCCAGGAAGGC
CGCTCCCGCGAAGAGGACGACCCGGGCCCGCAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

ABC transporter (ABC_tran)

(628-864)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.354

94.595

0.543
  uvrA Streptococcus pneumoniae TIGR4

57.354

94.595

0.543
  uvrA Streptococcus pneumoniae D39

57.354

94.595

0.543