Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   U5640_RS32770 Genome accession   NZ_CP141223
Coordinates   7138622..7139704 (-) Length   360 a.a.
NCBI ID   WP_340380548.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 7133622..7144704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - htrA 7138622..7139704 (-) 1083 - - Regulator

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 35918.42 Da        Isoelectric Point: 5.1707

>NTDB_id=836638 U5640_RS32770 WP_340380548.1 7138622..7139704(-) (htrA) [Streptomyces sp. SS7]
MDSPRFRALGLALLVCCAGCSGVGAPRATTAQAPQAAEATRAAQAAVRPPGQAAEELQGDFQRVIKDVLPSVVQIETDSG
LGSGVVYDGGGHIVTNAHVVADGRTFRVTTANSKKPLTATLVSAYPEQDLAVVKLDSVPAGLRAASFGDSSKVQVGQVVL
AMGSPLGLASSVTEGIVSATGRTVSEGSDGGGTGATLANMVQTSAAINPGNSGGALVGLDGRIIGIPTLAATDPQLGGGA
APGIGFAIPASTVRTIADQIVRSGRVTDSGRAALGITGRTFVDADFQPAGVVVVEVKSGGAAEKAGIGPGDVIVRLGDTD
ITTITSLTEALAEEKPGDRTTVTYTHNGKEKTARVTLGEQ

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=836638 U5640_RS32770 WP_340380548.1 7138622..7139704(-) (htrA) [Streptomyces sp. SS7]
ATGGACTCTCCCCGCTTCCGCGCCCTGGGACTCGCCCTGCTCGTGTGCTGTGCCGGGTGTTCCGGCGTCGGGGCTCCACG
GGCCACCACCGCCCAGGCCCCGCAGGCGGCGGAGGCGACCCGGGCCGCGCAGGCCGCCGTACGGCCGCCCGGGCAGGCCG
CGGAGGAGTTGCAGGGCGACTTCCAGCGGGTGATCAAGGACGTACTGCCCTCCGTGGTGCAGATCGAGACGGACAGCGGA
CTGGGGTCGGGGGTCGTCTACGACGGCGGGGGCCACATCGTCACCAACGCGCACGTCGTCGCGGACGGGCGGACGTTCCG
GGTGACCACCGCCAACAGCAAGAAGCCGCTGACGGCGACCCTCGTCTCCGCCTATCCGGAGCAGGACCTCGCCGTGGTCA
AGCTGGACAGCGTGCCGGCCGGGCTGCGGGCGGCGTCGTTCGGGGACTCCTCGAAGGTGCAGGTCGGGCAGGTCGTCCTG
GCGATGGGATCGCCGCTCGGGCTGGCGTCGAGCGTGACGGAGGGCATCGTCTCGGCGACCGGACGGACCGTCAGCGAGGG
CAGTGACGGCGGCGGTACGGGGGCGACGCTCGCCAACATGGTGCAGACCTCGGCGGCGATCAACCCGGGCAACAGCGGGG
GCGCGCTGGTGGGCCTGGACGGGCGGATCATCGGGATCCCGACGCTCGCCGCGACCGATCCCCAGCTCGGCGGCGGGGCG
GCGCCCGGCATCGGGTTCGCGATCCCCGCGTCGACCGTGCGCACGATCGCCGACCAGATCGTGCGCAGCGGCCGGGTGAC
CGACTCGGGCCGGGCGGCGCTCGGCATCACCGGACGCACCTTCGTGGACGCGGACTTCCAGCCCGCGGGGGTGGTCGTGG
TGGAGGTGAAGAGCGGCGGGGCGGCCGAGAAGGCGGGGATCGGGCCGGGGGACGTGATCGTCCGGCTCGGCGACACGGAC
ATCACCACCATCACCTCGCTGACGGAGGCGCTGGCCGAAGAGAAGCCGGGTGACCGGACCACCGTGACGTACACCCACAA
CGGCAAGGAGAAGACGGCCCGGGTGACGCTGGGTGAGCAGTGA

Domains

Predicted by InterProScan.

Trypsin-like peptidase domain (Trypsin_2)

(82-226)

PDZ domain (PDZ_2)

(289-357)

Peptidase family M50 (Peptidase_M50)

(223-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

33.676

100

0.364