Detailed information NTG0836621

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: U5640_RS21270
• Genome accession: NZ_CP141223
• Coordinates: 4615629..4618226 (-)
• Length: 865 a.a.
• NCBI ID: WP_340377358.1
• Uniprot ID: -
• Organism: Streptomyces sp. SS7
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4610629..4623226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
-	clpC	4615629..4618226 (-)	2598	-	-	Regulator

Sequence

Protein

• Length: 865 a.a.
• Molecular weight: 94228.62 Da
• Isoelectric Point: 4.7819

>NTDB_id=836621 U5640_RS21270 WP_340377358.1 4615629..4618226(-) (clpC) [Streptomyces sp. SS7]
MDAELTNRSRDAINAASNRAVSGGHPDLTPAHLLLALLQGQDNENIVDLLAAVGADQAAVRAGAEHVLAGLPSVTGSTVA
PPQPNRELLAVIADAQARAQELGDEFLSTEHLLIGTAAKGGQAADVLGRHGAGPDRLQEAFRKARGGRRVTTADPEGQYK
ALEKFGTDFTAAARDGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKDKRLVS
LDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPTVEDTIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPVEIDELQRSVDRLKMEELAIGKETDAASRERLEKLRRDLADKEEELRGLTARWEKEKQSLNRVGELKEK
LDDLRGQAERAQREADFDTAGKLLYGEIPALERDLEAATEAEEEVAKGTMVKEEVGSDDIADVVAAWTGIPAGRLLEGET
QKLLRMEAELGRRLIGQAEAVQAVSDAVRRSRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDVLLQVLDDGRLTDGQGRTVDFRNAILVL
TSNLGSQYLVDPVSTEAEKKEQVLEVVRASFKPEFLNRLDDLVVFSALSKDELGRIARLQIDRLARRLADRRLTLEVTDA
ALAWLADEGNDPAYGARPLRRLVQTAIGDRLAREILSGEVKDGDTVRVDTFGEDLIVGPKPAKTL

Nucleotide

• Length: 2598 bp

>NTDB_id=836621 U5640_RS21270 WP_340377358.1 4615629..4618226(-) (clpC) [Streptomyces sp. SS7]
GTGGACGCCGAGCTGACCAACCGGAGCCGGGACGCGATCAACGCGGCCAGTAACCGTGCCGTGTCGGGGGGCCACCCCGA
CCTCACCCCTGCCCACCTGCTGCTCGCGCTGCTCCAGGGGCAGGACAACGAGAACATCGTCGATCTTCTCGCCGCGGTCG
GCGCCGACCAGGCCGCCGTCCGCGCCGGAGCCGAGCACGTGCTCGCCGGGCTGCCCAGCGTGACCGGCTCCACCGTGGCG
CCCCCGCAGCCCAACCGCGAGCTGCTCGCCGTGATCGCCGACGCCCAGGCGCGGGCGCAGGAACTGGGCGACGAGTTCCT
CTCCACCGAGCACCTGCTGATCGGCACCGCCGCGAAGGGCGGCCAGGCCGCCGACGTGCTCGGCCGGCACGGCGCCGGCC
CCGACCGGCTCCAGGAGGCCTTCCGCAAGGCCCGCGGCGGCCGCCGGGTCACCACCGCCGACCCCGAGGGCCAGTACAAG
GCCCTGGAGAAGTTCGGCACCGACTTCACCGCCGCCGCCCGCGACGGCAAGCTCGACCCGGTCATCGGCCGGGACCAGGA
GATCCGCCGCGTCGTGCAGGTCCTCTCCCGCCGCACCAAGAACAACCCCGTCCTCATCGGCGAGCCCGGCGTCGGCAAGA
CCGCCGTCGTCGAGGGCCTCGCCCAGCGCATCGTGAAGGGCGACGTCCCGGAGTCGCTGAAGGACAAGCGGCTCGTCTCC
CTCGACCTCGGCGCCATGGTCGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCCTGAAGACCGTCCTCGCCGAGAT
CAAGGACAGCGACGGCCAGATCATCACCTTCATCGACGAACTGCACACGGTCGTCGGCGCGGGCGCCGGCGGCGACTCCG
CGATGGACGCCGGCAACATGCTCAAGCCGATGCTCGCCCGCGGTGAGCTGCGCATGGTCGGCGCGACCACGCTCGACGAG
TACCGCGAGCGGATCGAGAAGGACCCCGCCCTGGAACGGCGCTTCCAGCAGGTCCTGGTCGCGGAGCCCACCGTCGAGGA
CACCATCGCCATCCTGCGCGGACTCAAGGGCCGCTACGAGGCCCACCACAAGGTCCAGATCGCCGACAGCGCGCTGGTCG
CGGCCGCGACCCTCTCCGACCGGTACATCACCTCCCGCTTCCTGCCCGACAAGGCCATCGACCTCGTCGACGAGGCCGCC
TCCCGCCTCCGGATGGAGATCGACTCCTCGCCCGTCGAGATCGACGAGCTCCAGCGGTCCGTGGACCGGCTGAAGATGGA
GGAGCTGGCCATCGGCAAGGAGACCGACGCCGCCTCCCGCGAACGCCTGGAGAAGCTGCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTGACCGCCCGCTGGGAGAAGGAGAAGCAGTCCCTCAACCGGGTCGGCGAGCTGAAGGAGAAG
CTCGACGACCTGCGCGGGCAGGCCGAGCGGGCCCAGCGCGAGGCCGACTTCGACACCGCGGGCAAGCTGCTGTACGGCGA
GATCCCGGCCCTGGAGCGCGACCTGGAGGCCGCCACCGAGGCCGAGGAGGAGGTCGCCAAGGGCACCATGGTCAAGGAGG
AGGTCGGCTCCGACGACATCGCCGACGTCGTCGCCGCCTGGACCGGCATCCCGGCGGGCCGCCTCCTGGAGGGCGAGACG
CAGAAGCTGCTCCGCATGGAGGCCGAGCTGGGCCGCCGGCTGATCGGCCAGGCGGAAGCCGTCCAGGCCGTCTCGGACGC
CGTACGGCGCTCCCGCGCGGGCATCGCCGACCCCGACCGCCCGACCGGCTCCTTCCTCTTCCTCGGCCCCACCGGCGTCG
GCAAGACCGAGCTGGCCAAGGCCCTCGCCGACTTCCTCTTCGACGACGAGCGGGCCATGATCCGCATCGACATGTCGGAG
TACGGCGAGAAGCACAGCGTCGCCCGGCTCGTCGGCGCGCCGCCCGGCTACGTCGGGTACGAGGAGGGCGGCCAGCTCAC
CGAGGCGGTCCGCCGCCGCCCGTACAGCGTGGTCCTCCTGGACGAGGTCGAGAAGGCCCACCCCGAGGTCTTCGACGTCC
TGCTGCAGGTCCTCGACGACGGCCGTCTCACCGACGGCCAGGGCCGCACGGTCGACTTCCGCAACGCGATCCTGGTCCTG
ACCTCGAACCTGGGCAGCCAGTACCTGGTCGACCCGGTCTCCACGGAGGCGGAGAAGAAGGAACAGGTCCTGGAGGTGGT
CCGGGCGTCCTTCAAGCCGGAGTTCCTCAACCGCCTCGACGACCTGGTCGTCTTCTCCGCCCTGTCCAAGGACGAGCTGG
GCCGGATCGCCCGCCTCCAGATCGACCGCCTCGCCCGCCGCCTCGCCGACCGCCGCCTCACCCTGGAGGTCACCGACGCG
GCCCTCGCCTGGCTCGCCGACGAGGGCAACGACCCCGCCTACGGTGCCCGCCCGCTGCGCCGCCTGGTCCAGACGGCCAT
CGGCGACCGCCTCGCCAGGGAGATCCTCTCCGGCGAGGTCAAGGACGGCGACACGGTCCGCGTGGACACCTTCGGCGAGG
ACCTGATCGTCGGCCCGAAGCCCGCGAAGACCCTCTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-848)

• AAA lid domain (AAA_lid_9) (344-446)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-761)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.643	100	0.44
clpC	Lactococcus lactis subsp. cremoris KW2	46.495	80.809	0.376
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	45.624	80.578	0.368