Detailed information NTG0836615

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: U5640_RS19300
• Genome accession: NZ_CP141223
• Coordinates: 4183107..4185632 (-)
• Length: 841 a.a.
• NCBI ID: WP_340377004.1
• Uniprot ID: -
• Organism: Streptomyces sp. SS7
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4178107..4190632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
-	clpC	4183107..4185632 (-)	2526	-	-	Regulator

Sequence

Protein

• Length: 841 a.a.
• Molecular weight: 93048.22 Da
• Isoelectric Point: 5.9363

>NTDB_id=836615 U5640_RS19300 WP_340377004.1 4183107..4185632(-) (clpC) [Streptomyces sp. SS7]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETATAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAASGDTKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLT
QEDILRIVDLMISKVDERLKDRDMGIELSQSAKELLSKKGYDPVLGARPLRRTIQREIEDTLSEKILFGELRPGHIVVVD
TEGEGETKTFTFRGEEKSSLPDVPPIEQAAGGAGPNLSKDA

Nucleotide

• Length: 2526 bp

>NTDB_id=836615 U5640_RS19300 WP_340377004.1 4183107..4185632(-) (clpC) [Streptomyces sp. SS7]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCCAAGGCCCTTGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCCGGGCACATCCCCTTC
ACCCCCCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACGGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTCAAGCTGGGCGCTGATCTCAACCGGG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGCTACCAGGGCAAGGAGACCGCCACCGCCGGCGGGCCTGCCGAGGGCACC
CCCTCGACGTCCCTGGTCCTCGACCAGTTCGGCCGGAACCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACCAAGAACAACCCGGTCCTGATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCCCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTCGACCTCGGCGCGCTGGTCGCCGGCTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTGCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTCCACACGCTGGTCGGTGCGGGTGCCG
CCGAGGGCGCCATCGACGCCGCTTCGATCCTGAAGCCGATGCTGGCCCGCGGTGAGCTCCAGACCATCGGTGCCACCACG
CTCGACGAGTACCGCAAGCACCTGGAGAAGGACGCCGCCCTCGAGCGCCGCTTCCAGCCCATCCAGGTCGCCGAGCCGTC
GCTGCCGCACACCATCGAGATCCTCAAGGGTCTCCGCGACCGGTACGAGGCCCACCACCGCGTCTCCATCACCGACGAGG
CGCTGGTCCAGGCCGCCACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGTTCCCGGATGCGCATCCGCCGGATGACCGCTCCGCCGGACCTGCGCGAGTTCGACGAGAAGATCGCCGGCGT
GCGCCGCGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAGGCCGCCTCCCTGCGCGACAAGGAGAAGCAGCTCC
TCGCCGCCAAGGCGAAGCGCGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTGATC
GCCGAGGTCCTCGCGACGGCCACCGGCATCCCGGTCTTCAAGCTCACGGAGGAGGAGTCGTCCCGCCTGCTGCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGCCAGGTCGACGCCGTCAAGGCGCTGTCCAAGGCGATCCGCCGTACCCGTGCCG
GTCTGAAGGACCCGAAGCGTCCGGGTGGTTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTGTCCAAG
GCGCTCGCCGAGTTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGTCTCTTCGGCTCCCCGCCCGGATACGTGGGCTACGAAGAGGGCGGCCAGCTGACCGAGAAGGTCCGCCGCAAGC
CGTTCTCCGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACATCTTCAACTCGCTGCTGCAGATCCTGGAGGAC
GGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGCACCCG
GGACATCTCCAAGGGCTTCAACCTGGGCTTCGCGGCCTCGGGCGACACGAAGTCCAACTACGAGCGCATGAAGAACAAGG
TCTCGGACGAGCTCAAGCAGCACTTCCGCCCCGAGTTCCTCAACCGCGTCGACGACGTGGTCGTCTTCCCGCAGCTGACG
CAGGAGGACATCCTGCGGATCGTCGACCTGATGATCAGCAAGGTGGACGAGCGCCTGAAGGACCGGGACATGGGCATCGA
GCTCTCCCAGTCCGCCAAGGAACTGCTGTCCAAGAAGGGCTACGACCCGGTGCTGGGCGCGCGTCCGCTGCGTCGCACGA
TCCAGCGCGAGATCGAGGACACGCTCTCCGAGAAGATCCTCTTCGGCGAGCTGCGTCCCGGTCACATCGTGGTCGTGGAC
ACCGAGGGCGAGGGTGAGACCAAGACCTTCACCTTCCGCGGCGAGGAGAAGTCGTCCCTGCCCGACGTCCCGCCGATCGA
GCAGGCCGCCGGCGGCGCCGGCCCGAACCTGAGCAAGGACGCGTAG

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (93-142)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (16-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (209-329)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (719-799)

• AAA domain (Cdc48 subfamily) (AAA_2) (541-712)

• AAA lid domain (AAA_lid_9) (349-449)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	61.358	96.314	0.591
clpC	Streptococcus mutans UA159	44.337	98.692	0.438
clpC	Streptococcus thermophilus LMD-9	42.891	99.524	0.427
clpC	Streptococcus thermophilus LMG 18311	42.721	99.643	0.426
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.827	96.314	0.422
clpC	Streptococcus pneumoniae D39	44.209	95.482	0.422
clpC	Streptococcus pneumoniae Rx1	44.209	95.482	0.422
clpC	Streptococcus pneumoniae TIGR4	44.236	94.887	0.42
clpE	Streptococcus mutans UA159	54.153	74.435	0.403
clpE	Streptococcus pneumoniae TIGR4	52.97	74.078	0.392
clpC	Lactococcus lactis subsp. cremoris KW2	53.226	73.722	0.392
clpE	Streptococcus pneumoniae Rx1	52.809	74.078	0.391
clpE	Streptococcus pneumoniae R6	52.809	74.078	0.391
clpE	Streptococcus pneumoniae D39	52.809	74.078	0.391