Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   U5640_RS15535 Genome accession   NZ_CP141223
Coordinates   3408422..3409474 (-) Length   350 a.a.
NCBI ID   WP_340376385.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3403422..3414474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - amiE 3408422..3409474 (-) 1053 - - Regulator

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38411.52 Da        Isoelectric Point: 6.3111

>NTDB_id=836607 U5640_RS15535 WP_340376385.1 3408422..3409474(-) (amiE) [Streptomyces sp. SS7]
MTIIEETAPVPAPREGDDGPLLEVRDLHVEFVTREGVVQAVNGVNYSVKAGETLAVLGESGSGKSVTAQAIMGILDMPPA
RIPQGEILFRGQDMLKMSAEERRRIRGRRIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKEARTKSIELMDKVKIP
AAAARVDDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVADVA
DKIAVMYAGRIVERAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLRIPTGCAFNPRCPKAQDICRTEI
PALVPVTEQDGGELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=836607 U5640_RS15535 WP_340376385.1 3408422..3409474(-) (amiE) [Streptomyces sp. SS7]
GTGACCATCATCGAAGAAACCGCACCGGTGCCGGCGCCCCGCGAGGGCGACGACGGACCACTGCTCGAAGTGCGTGACCT
GCACGTCGAGTTCGTCACCCGCGAGGGTGTGGTCCAGGCCGTCAACGGCGTCAACTACAGCGTGAAGGCCGGCGAGACCC
TCGCCGTCCTCGGCGAGTCCGGTTCCGGCAAGTCCGTGACCGCGCAGGCGATCATGGGCATCCTCGACATGCCGCCGGCC
CGGATCCCGCAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCCGCCGAGGAGCGCCGGCGCATCCGCGG
CCGGCGGATCGCCATGATCTTCCAGGACGCGCTCAGCTCGCTCAACCCCGTGCTCTCCGTCGGCTACCAGCTCGGCGAGA
TGTTCCGGGTGCACCAGGGCCTCTCCAAGAAGGAGGCCAGGACCAAGTCGATCGAGCTGATGGACAAGGTCAAGATCCCC
GCCGCCGCGGCCCGGGTGGACGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCATGGCGCT
GGCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCCACCACGGCCCTCGACGTGACGGTCCAGGCCCAGGTCATGGACC
TGCTCGCGGAGCTCCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGACCTCGGCGTGGTCGCCGACGTCGCG
GACAAGATCGCGGTGATGTACGCGGGCCGGATCGTCGAGCGCGCCCCCGTGCACGAGCTGTACAAGCGCCCCGCGCACCC
CTACACCCGCGGTCTGCTGGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGTCTGCCGC
CCAACCTGCTGCGGATCCCCACCGGCTGCGCCTTCAACCCGCGCTGCCCCAAGGCGCAGGACATCTGCCGCACGGAGATC
CCGGCCCTGGTGCCGGTGACCGAGCAGGACGGCGGCGAACTGGTCGGCCGGGGTTCGGCGTGCCACTTCTGGAAGGAGAC
GATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(42-200)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(252-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.014

84.571

0.431
  oppD Streptococcus mutans UA159

48.377

88

0.426
  amiE Streptococcus thermophilus LMG 18311

50.338

84.571

0.426
  amiE Streptococcus thermophilus LMD-9

50.338

84.571

0.426