Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH39_RS19635 Genome accession   NZ_CP126114
Coordinates   3889067..3891430 (-) Length   787 a.a.
NCBI ID   WP_066090419.1    Uniprot ID   -
Organism   Neobacillus novalis strain XLM17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3884067..3896430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH39_RS19620 (QNH39_19620) dtd 3885700..3886143 (-) 444 WP_066090409.1 D-aminoacyl-tRNA deacylase -
  QNH39_RS19625 (QNH39_19625) - 3886155..3888350 (-) 2196 WP_066090412.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH39_RS19630 (QNH39_19630) - 3888564..3889076 (-) 513 WP_066090416.1 adenine phosphoribosyltransferase -
  QNH39_RS19635 (QNH39_19635) recJ 3889067..3891430 (-) 2364 WP_066090419.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH39_RS19640 (QNH39_19640) secDF 3891632..3893893 (-) 2262 WP_066090422.1 protein translocase subunit SecDF -
  QNH39_RS19645 (QNH39_19645) - 3894011..3894307 (-) 297 WP_066090425.1 post-transcriptional regulator -
  QNH39_RS19650 (QNH39_19650) spoVB 3894431..3895975 (+) 1545 WP_066090428.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87830.62 Da        Isoelectric Point: 5.2671

>NTDB_id=836603 QNH39_RS19635 WP_066090419.1 3889067..3891430(-) (recJ) [Neobacillus novalis strain XLM17]
MLKSKSRWIVRSSDHNLVKLLADELKITPLVASLLVNRGLDSLESARYFLFGKDEFHDPYLLKGMDIAVNRIREAIDKQE
SILIFGDYDADGVSSTSVLMITLRDLGANVQFYIPNRFTEGYGPNESAFRQAAENGIKLIITVDTGISALHEAAVAKDIG
IDLIITDHHEPGPVLPEALAIIHPKLPDSHYPFRELAGVGVAFKLAHALYGEVPEHLLEIAVIGTIADLVSLKGENRLIA
KKGLEKLKATKNIGLKAILKLAGVDPLSINEETIGFTLAPRINAVGRLEDADLAVQLILTRDPEEAQHLAEEMDALNKTR
QAIVNAITAEAIEEVETNYSTPSNKVLVIGREGWNAGVIGIVASRLVDKYYRPTIVLNFDPDKGVAKGSARSIAGFDLFK
NLSTCREILPHFGGHPMAAGMTLKLEDVAELRTRLNSLAEEQLTEADFVPVTYLDEEIRLEDISLSTVEEMSLLSPFGMD
NPKPKVLINNAAIASMRKIGSEQNHLKVLVNEADANLDGVGFGLGSLVDQISPASKISFIGELSINEWNNIRKPQIFIRD
IAVNSWQLFDYRGQKRISTIAGSVPAENRKFIIFNKEHLEKMSPELMPETIHVQDIEEAKALNCNQANIVLVDFPPSKEI
LEVLLKGKQPARVYAYFYKQSSDFFSTIPTRDHFKWFYAFLVKKGPIDLKRYGEDIAKHRGWSQETINFMSKVFSELDFV
TINNGFISLKTGAQKRDLSDSRTYQTKQKQYALERDLLFSSFQDLKGWFDQIIQESVETEEAITEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=836603 QNH39_RS19635 WP_066090419.1 3889067..3891430(-) (recJ) [Neobacillus novalis strain XLM17]
ATGTTAAAGTCAAAATCAAGATGGATTGTTCGCAGTTCTGATCATAATCTAGTAAAGCTGCTAGCAGATGAATTGAAAAT
TACACCTCTAGTTGCGTCGCTGCTTGTCAACCGTGGCTTAGACAGCCTAGAATCTGCACGGTATTTTTTATTTGGCAAGG
ATGAATTTCATGACCCTTACCTATTAAAAGGGATGGATATTGCAGTTAACAGAATTCGAGAGGCAATTGATAAACAAGAA
TCCATCCTTATTTTTGGTGATTATGACGCTGACGGTGTAAGCAGTACATCGGTGTTGATGATTACCCTTCGTGACCTGGG
AGCAAATGTACAATTCTACATCCCTAATCGCTTTACTGAAGGGTATGGGCCGAATGAATCAGCCTTCCGTCAAGCGGCGG
AAAATGGAATAAAGTTAATTATTACTGTTGATACTGGAATATCTGCTCTCCACGAAGCAGCAGTGGCAAAAGATATCGGA
ATTGACCTAATTATTACCGACCACCATGAACCGGGGCCGGTCTTACCAGAAGCACTTGCGATTATTCACCCAAAGCTTCC
TGATAGCCATTATCCATTTCGGGAACTAGCAGGAGTGGGAGTTGCCTTTAAACTCGCCCATGCCCTTTATGGTGAAGTTC
CTGAGCATTTACTTGAAATTGCCGTCATTGGAACGATTGCCGATTTAGTTTCATTAAAAGGTGAAAATCGGCTGATTGCG
AAAAAAGGGCTTGAAAAGTTAAAGGCTACGAAAAATATTGGCCTTAAAGCGATTTTAAAATTGGCTGGGGTCGATCCGCT
GTCAATAAATGAAGAAACCATTGGATTTACACTTGCACCAAGGATTAACGCCGTGGGCCGCTTAGAAGATGCAGACCTCG
CAGTTCAGCTTATCCTCACTAGAGACCCGGAGGAAGCACAGCATTTAGCGGAAGAAATGGATGCGTTAAATAAGACAAGG
CAAGCGATTGTTAATGCGATTACCGCTGAAGCAATTGAAGAGGTGGAAACAAATTATTCAACTCCGTCCAATAAGGTTCT
CGTCATCGGTAGAGAAGGCTGGAATGCCGGTGTCATTGGCATCGTCGCCTCAAGGCTTGTAGATAAGTACTACCGGCCAA
CGATTGTGTTAAATTTTGACCCGGATAAAGGGGTCGCAAAGGGATCTGCCCGGAGCATTGCCGGCTTTGACCTGTTTAAA
AATTTATCGACCTGCCGTGAGATTCTTCCTCACTTTGGCGGCCATCCGATGGCTGCAGGAATGACCTTGAAATTAGAGGA
TGTTGCTGAGCTCCGCACAAGATTAAATAGCCTTGCTGAGGAGCAGTTAACGGAAGCGGATTTTGTCCCCGTAACCTATC
TGGATGAGGAAATCCGTCTAGAAGACATTAGTTTATCGACAGTCGAAGAAATGAGTCTGCTTTCTCCTTTTGGAATGGAC
AACCCTAAACCAAAAGTTTTAATAAATAATGCTGCTATTGCCAGTATGAGAAAAATTGGCAGTGAACAAAACCATTTAAA
GGTGTTAGTGAATGAAGCTGATGCCAATCTTGATGGAGTAGGTTTTGGGTTAGGATCTTTAGTTGACCAAATTTCACCTG
CTTCAAAAATTTCATTCATTGGAGAATTATCTATTAATGAATGGAACAATATACGTAAACCACAAATTTTCATTCGCGAT
ATCGCGGTGAATTCTTGGCAGTTATTTGACTATCGCGGGCAAAAGCGAATAAGCACCATTGCCGGGTCCGTACCTGCTGA
AAACAGGAAATTCATTATTTTTAATAAGGAACATCTAGAAAAAATGAGCCCTGAATTGATGCCTGAGACGATTCATGTTC
AAGATATCGAAGAAGCAAAAGCTCTCAATTGTAACCAGGCAAATATCGTCTTAGTTGACTTCCCGCCCTCAAAAGAGATT
CTTGAGGTTTTATTAAAAGGGAAACAGCCGGCAAGGGTGTATGCGTATTTTTATAAGCAATCCAGTGATTTCTTCAGCAC
GATTCCAACCCGTGACCATTTTAAATGGTTCTATGCCTTTTTAGTAAAGAAAGGTCCAATTGATCTTAAGCGATATGGCG
AAGATATCGCCAAACATCGCGGCTGGTCACAGGAAACGATAAACTTTATGTCAAAGGTGTTTTCTGAACTGGATTTTGTT
ACAATAAACAATGGATTTATTTCTTTAAAAACCGGCGCGCAAAAGCGTGATTTAAGTGACTCTAGGACTTATCAAACTAA
GCAGAAGCAATATGCTCTTGAACGGGATTTATTGTTTTCGTCCTTCCAAGATTTAAAGGGCTGGTTCGATCAAATTATCC
AAGAGTCGGTAGAAACTGAGGAGGCAATAACAGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

DHH family (DHH)

(82-225)

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(316-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.102

99.619

0.549