Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH39_RS19540 Genome accession   NZ_CP126114
Coordinates   3867734..3870178 (-) Length   814 a.a.
NCBI ID   WP_066090370.1    Uniprot ID   A0AA95MQF9
Organism   Neobacillus novalis strain XLM17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3862734..3875178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH39_RS19520 (QNH39_19520) - 3865561..3866634 (-) 1074 WP_066090362.1 AI-2E family transporter -
  QNH39_RS19525 (QNH39_19525) - 3866727..3866861 (-) 135 WP_082804858.1 YrzQ family protein -
  QNH39_RS19530 (QNH39_19530) - 3866919..3867110 (-) 192 WP_024029972.1 hypothetical protein -
  QNH39_RS19535 (QNH39_19535) - 3867200..3867700 (-) 501 WP_066090367.1 PRC-barrel domain-containing protein -
  QNH39_RS19540 (QNH39_19540) recD2 3867734..3870178 (-) 2445 WP_066090370.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH39_RS19545 (QNH39_19545) - 3870213..3870866 (-) 654 WP_066090371.1 tetratricopeptide repeat protein -
  QNH39_RS19550 (QNH39_19550) - 3871023..3871154 (-) 132 WP_268874907.1 hypothetical protein -
  QNH39_RS19555 (QNH39_19555) mnmA 3871194..3872312 (-) 1119 WP_066090374.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH39_RS19560 (QNH39_19560) - 3872351..3873493 (-) 1143 WP_066090377.1 cysteine desulfurase family protein -
  QNH39_RS19565 (QNH39_19565) - 3873539..3873958 (-) 420 WP_066090381.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 814 a.a.        Molecular weight: 92208.50 Da        Isoelectric Point: 5.1435

>NTDB_id=836602 QNH39_RS19540 WP_066090370.1 3867734..3870178(-) (recD2) [Neobacillus novalis strain XLM17]
MEKQDTLDLFQEQAKFVKGRPIVTIFHNEQNLYTVLRIRVDETNHNYEDKEAVVTGYFPKIHEQETYIFFGEFKEHPKFG
MQFHTNHFRKDMPQTKQGVAAYLSGEMFKGIGKKTAQSIVDTLGEDAISKILNQPSLLDSIPKLPPEKAKMLYDTLMEHQ
GLEQVMVALNQYGFGPQISMRIYQAYKEETLGIIQKNPYKLVEDIEGIGFGRADELGYQLGILGNHPDRIKAACLYILEK
ESIQTGHVFMHAEELLEQVKVLLEENKRDQIEYADISTEVIKLEQEEKIKGEEKRVYLPSLFFAEKGLVTSIQRILQQTE
YKDQFPESEFLLALGSLEERLKVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGVSLELKDYQKKN
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGFNGTEAFDRDDASPLEGKILIVDETSMLDIWLANQLFKALPENIQV
ILVGDEDQLPSVGPGQVLKDLLQSERIPTVRLTDIYRQAEGSSIIELAHDIKKGYLPPDVTAKQADRSFIKCSTTQVAQV
VEKVAQNAKNKGYSAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPDGKRKEIAFGDVKYRIGDKVLQLVNQPESNVFNG
DIGEIISIIYAKENTEKQDMIYISFEGNEVEYTKQDLTQITHAYCCSVHKSQGSEFPIVILPITRSYYRMLRRNLIYTAI
TRSKQSLILCGEEDALRMGVERADELSRQTTLCQKLQETIHVKNKNKLAEDQEKSATNGDQKPVKELSYEEELMQVNPLV
GMENVSPYDFMVND

Nucleotide


Download         Length: 2445 bp        

>NTDB_id=836602 QNH39_RS19540 WP_066090370.1 3867734..3870178(-) (recD2) [Neobacillus novalis strain XLM17]
ATGGAAAAGCAAGACACGCTTGATTTATTTCAAGAGCAGGCAAAGTTCGTCAAAGGGCGGCCGATTGTAACGATTTTTCA
CAATGAACAAAACCTATATACCGTATTAAGAATCAGGGTCGATGAAACCAATCACAACTATGAAGACAAAGAGGCAGTAG
TTACCGGTTATTTTCCGAAAATCCATGAACAGGAGACATATATTTTTTTCGGGGAGTTTAAGGAACATCCAAAGTTTGGA
ATGCAATTTCATACCAATCATTTTCGAAAGGATATGCCGCAAACAAAACAAGGAGTTGCAGCCTATTTATCGGGTGAAAT
GTTTAAAGGAATTGGCAAGAAAACAGCCCAAAGTATTGTCGATACCTTAGGTGAGGACGCGATCTCCAAAATTCTTAATC
AGCCGTCACTACTGGATTCCATTCCCAAGCTTCCTCCTGAAAAGGCAAAAATGCTTTACGATACACTGATGGAACATCAA
GGACTTGAACAGGTAATGGTAGCCTTAAACCAATATGGTTTTGGCCCGCAAATTTCGATGCGGATATACCAAGCGTATAA
AGAGGAAACCCTCGGTATCATTCAAAAAAATCCCTACAAGCTTGTTGAGGACATTGAAGGCATCGGTTTTGGACGGGCGG
ACGAGCTTGGATACCAGCTGGGAATTTTGGGTAATCATCCTGATCGAATTAAAGCAGCTTGTCTTTACATACTTGAAAAA
GAAAGCATCCAAACAGGACACGTATTCATGCACGCCGAGGAATTACTTGAACAAGTAAAAGTTCTCCTCGAGGAAAATAA
GCGCGATCAGATTGAATACGCAGATATATCGACTGAGGTCATTAAACTTGAACAAGAGGAGAAAATAAAAGGAGAAGAAA
AGCGCGTTTATTTGCCATCGTTATTTTTCGCAGAAAAAGGACTTGTAACAAGCATCCAGCGCATACTGCAGCAAACGGAA
TACAAGGATCAATTTCCTGAATCGGAGTTCCTTCTCGCACTAGGAAGCTTGGAGGAGCGGCTCAAGGTGCAATATGCGCC
AACTCAAAAAGAAGCAATTCAAACTGCATTAATGTCGCCAATGCTTATCTTAACAGGGGGCCCAGGAACCGGTAAAACAA
CGGTCATTAAGGGAATTGTTGAACTTTATGCGGAATTGCACGGAGTCTCCTTAGAGCTGAAGGACTATCAGAAAAAGAAT
GAACCTTTCCCATTTTTGCTTGCGGCACCAACAGGAAGAGCGGCCAAAAGAATGAGCGAATCGACAGGTCTTCCTGCCGT
AACCATCCACCGGCTGCTCGGGTTTAATGGAACGGAAGCGTTTGACCGCGATGATGCAAGCCCGCTAGAGGGGAAAATAT
TAATTGTCGATGAGACCTCGATGCTTGATATTTGGCTTGCTAATCAATTGTTTAAGGCCTTGCCGGAAAATATCCAAGTC
ATCCTGGTCGGAGATGAAGATCAGCTTCCGTCTGTTGGTCCTGGTCAGGTTTTAAAAGATTTACTTCAATCTGAGCGGAT
TCCAACCGTCAGATTAACAGATATTTATCGTCAGGCTGAAGGGTCCTCGATTATTGAACTGGCTCATGATATCAAAAAGG
GGTATCTTCCTCCTGATGTTACCGCGAAGCAAGCCGACCGTTCCTTCATCAAATGTTCAACCACCCAGGTGGCTCAAGTA
GTTGAAAAAGTGGCCCAAAATGCCAAAAATAAAGGGTATTCGGCAAAGGATATTCAAGTATTGGCACCGATGTACAGAGG
TCCTGCCGGGATTGACCGGCTAAATGTCTTACTTCAGGAAATTTTCAATCCGAATCCTGACGGCAAGCGCAAGGAAATTG
CCTTTGGCGATGTGAAATACCGTATTGGTGATAAGGTGCTCCAGCTCGTCAACCAGCCGGAAAGCAATGTTTTTAACGGG
GATATAGGTGAAATTATCTCGATCATTTACGCAAAAGAAAACACCGAAAAGCAAGATATGATTTATATTTCTTTTGAAGG
CAATGAGGTTGAATATACAAAGCAGGACTTAACTCAGATTACACATGCATACTGCTGCTCGGTCCATAAATCACAGGGAA
GCGAGTTCCCGATTGTTATTCTCCCGATAACTAGAAGCTATTATCGGATGCTGCGGAGAAATTTAATTTATACGGCGATT
ACAAGAAGCAAACAATCATTGATTTTATGCGGCGAAGAGGATGCACTGCGAATGGGTGTCGAAAGAGCCGATGAGCTTTC
GAGGCAAACGACCCTTTGCCAAAAGCTTCAAGAAACCATTCACGTTAAAAATAAAAATAAATTGGCTGAAGACCAAGAAA
AATCAGCAACCAATGGCGACCAAAAACCGGTAAAAGAATTGTCCTACGAAGAAGAATTAATGCAGGTTAATCCACTGGTA
GGAATGGAAAACGTTTCACCTTATGATTTTATGGTAAATGACTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.599

98.526

0.597