Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH23_RS04515 Genome accession   NZ_CP126113
Coordinates   887136..889529 (+) Length   797 a.a.
NCBI ID   WP_120068735.1    Uniprot ID   A0A443J400
Organism   Siminovitchia fortis strain XLM16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 882136..894529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH23_RS04490 (QNH23_04490) - 882796..883452 (+) 657 WP_120068748.1 YitT family protein -
  QNH23_RS04495 (QNH23_04495) - 883449..883868 (+) 420 WP_018705754.1 Rrf2 family transcriptional regulator -
  QNH23_RS04500 (QNH23_04500) - 883890..885032 (+) 1143 WP_120068745.1 cysteine desulfurase family protein -
  QNH23_RS04505 (QNH23_04505) mnmA 885046..886161 (+) 1116 WP_120068741.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH23_RS04510 (QNH23_04510) - 886446..887114 (+) 669 WP_120068738.1 tetratricopeptide repeat protein -
  QNH23_RS04515 (QNH23_04515) recD2 887136..889529 (+) 2394 WP_120068735.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH23_RS04520 (QNH23_04520) - 889569..890099 (+) 531 WP_120068731.1 PRC-barrel domain-containing protein -
  QNH23_RS04525 (QNH23_04525) - 890059..890247 (+) 189 WP_120068728.1 hypothetical protein -
  QNH23_RS04530 (QNH23_04530) - 890345..891415 (+) 1071 WP_120068724.1 AI-2E family transporter -
  QNH23_RS04535 (QNH23_04535) alaS 891766..894396 (+) 2631 WP_120068721.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 89989.23 Da        Isoelectric Point: 4.9016

>NTDB_id=836532 QNH23_RS04515 WP_120068735.1 887136..889529(+) (recD2) [Siminovitchia fortis strain XLM16]
MESLDLFSENEKFMKGRHLATIFHNEQNLYSVVRIRVEETNEEYKEKEAVITGYFPKIHEQETYIFYGGLKEHPKFGLQF
HANHFKKEIPQTKQGLVMYLSSDLFKGIGEKTAERIVEALGENAISIILSKPSVLDEIPRVSPEAAKNLYEALLEHQGLE
QVMIGLNQYGFGPQLSMKIYQVYKEDTLAIIEKNPYQLIEDVEGVGFGRADELGVQLGIVGNHPDRIKAGCLYVLDQQCM
QNGHVYLEAEQLLEQVKQLLESSQAVEIPFQIIADALVQLKEEGKIIGEEQRIYMPSLYFSEKGLVANIRRIMEQKQYAD
QFPESEFLLALGNLEERLGVQYAPSQKEAIQTALTSPLMILTGGPGTGKTTVIKGIVELYAELHGCSLDPHAYKKEDIFP
FILAAPTGRAAKRMAESTGLPAMTIHRLLGMTGQESLDTEGEREIEGKIIIIDEMSMVDTWLAHQLFKSLPDSIQVILVG
DEDQLPSVGPGQVLKDLLASNTLPVVQLTDIYRQADGSSIVELAHKIKNGKIPSDVTAQRKDRSFIKCQAPQIGGAVEQV
VKNALTKGYTAKDIQVLAPMYRGPAGIDNLNKILQEVFNPKKEKWNKEITLGETKFRIGDKVLQLVNQPEKNVFNGDIGE
IISILYAKENVEKQDMIIVSFEGTEVTYMRQDFNQITHAFCCSIHKAQGSEFPIVILPVVRNYYRMLRRNLLYTAITRSK
QFLILCGEESAFRVGIEREDDQKRQTTLREKLAGEKQQPVIEEKMNEEQEELSYEDKLFLADPMIGMENVSPYDFLD

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=836532 QNH23_RS04515 WP_120068735.1 887136..889529(+) (recD2) [Siminovitchia fortis strain XLM16]
ATGGAATCGCTTGATTTGTTTTCCGAAAATGAAAAGTTCATGAAGGGCCGGCACCTCGCCACGATTTTCCATAATGAACA
AAACCTGTACTCTGTCGTCAGGATCAGAGTGGAAGAGACAAACGAGGAGTATAAGGAAAAAGAAGCGGTCATCACCGGTT
ATTTTCCAAAAATACACGAACAGGAAACGTATATTTTTTACGGCGGTTTAAAGGAACATCCGAAATTTGGCCTCCAATTT
CATGCGAACCATTTCAAAAAGGAAATTCCGCAGACAAAACAAGGGCTTGTCATGTACCTATCCAGTGATTTATTCAAAGG
CATCGGTGAAAAAACGGCCGAAAGAATCGTAGAAGCTCTCGGAGAGAATGCCATCAGCATCATTTTGAGCAAGCCGTCGG
TCCTGGATGAAATTCCGCGGGTTTCTCCGGAAGCAGCCAAAAATCTGTATGAAGCACTGCTTGAACACCAAGGACTGGAA
CAGGTCATGATCGGCCTGAATCAATACGGATTCGGGCCGCAACTATCCATGAAGATTTACCAGGTGTACAAAGAAGATAC
ATTAGCCATAATTGAAAAGAATCCGTACCAGCTTATAGAAGATGTAGAAGGTGTCGGTTTCGGCAGGGCTGATGAGCTGG
GAGTCCAGCTTGGCATCGTCGGGAATCATCCGGACAGAATCAAGGCCGGATGCCTGTATGTTCTTGACCAGCAATGCATG
CAAAACGGACATGTCTATTTAGAGGCGGAGCAGCTGCTTGAACAGGTGAAACAGCTGCTTGAAAGCAGCCAGGCGGTTGA
AATTCCTTTCCAAATTATTGCTGATGCCCTTGTCCAGTTAAAAGAAGAAGGAAAAATAATTGGTGAGGAACAGCGTATTT
ACATGCCATCTCTTTATTTTTCAGAGAAAGGCCTTGTTGCGAACATCCGGCGGATTATGGAACAAAAACAGTATGCTGAT
CAATTTCCGGAATCCGAGTTTTTATTGGCGCTTGGGAATCTGGAAGAGCGGTTGGGCGTCCAGTATGCACCATCCCAGAA
AGAAGCGATTCAAACAGCCTTGACGAGTCCTTTAATGATACTGACAGGCGGACCCGGAACCGGAAAAACAACGGTCATTA
AGGGAATTGTCGAACTGTATGCCGAGCTTCACGGCTGTTCGCTCGATCCTCACGCATATAAAAAAGAAGATATATTTCCG
TTTATTTTGGCTGCACCGACAGGACGTGCCGCAAAAAGAATGGCGGAATCGACCGGGCTTCCTGCCATGACCATTCACAG
GCTGTTGGGCATGACAGGTCAGGAGAGCCTGGATACAGAAGGCGAACGTGAAATCGAAGGAAAGATCATCATTATCGACG
AAATGTCGATGGTGGATACATGGCTTGCCCATCAGCTTTTCAAGTCACTCCCCGATTCGATCCAGGTCATTTTGGTGGGA
GATGAAGACCAGCTTCCTTCAGTTGGTCCCGGGCAAGTGCTGAAAGATCTTTTGGCCTCTAATACTCTTCCGGTTGTCCA
ATTAACAGACATTTATCGGCAGGCGGACGGTTCGTCGATTGTGGAACTGGCACACAAAATAAAGAACGGAAAGATCCCTT
CCGATGTTACGGCTCAGCGGAAAGACCGGTCTTTTATCAAATGCCAGGCACCGCAAATAGGGGGTGCTGTTGAGCAGGTT
GTAAAAAATGCTCTAACAAAAGGATACACGGCCAAGGATATTCAGGTATTAGCCCCCATGTACCGCGGGCCCGCCGGAAT
CGACAACCTGAATAAAATATTGCAGGAAGTTTTTAATCCCAAAAAAGAAAAATGGAATAAGGAAATCACATTGGGAGAGA
CAAAATTCAGGATTGGGGACAAAGTGCTGCAGCTCGTCAACCAGCCGGAAAAAAATGTCTTCAATGGGGATATCGGTGAA
ATCATTTCCATATTGTATGCAAAAGAAAACGTCGAAAAGCAGGACATGATCATTGTCTCTTTTGAAGGTACGGAAGTCAC
ATACATGCGCCAGGATTTTAACCAGATTACCCATGCTTTTTGCTGTTCCATCCATAAGGCGCAAGGAAGCGAATTTCCGA
TCGTCATCCTTCCGGTTGTGAGGAATTATTATCGGATGCTGCGCCGCAATTTATTATATACAGCCATCACAAGGAGCAAG
CAGTTTCTCATTTTGTGCGGAGAAGAAAGTGCTTTCCGGGTCGGGATAGAACGTGAAGATGATCAAAAAAGGCAAACTAC
ACTGCGTGAGAAACTGGCTGGTGAAAAGCAACAGCCGGTCATAGAAGAAAAAATGAATGAGGAGCAAGAGGAATTGTCAT
ATGAAGATAAACTTTTCTTGGCAGACCCCATGATTGGCATGGAAAATGTTTCACCTTATGATTTCCTCGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-661)

AAA domain (AAA_30)

(342-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A443J400

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.886

99.122

0.604