Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH23_RS04410 Genome accession   NZ_CP126113
Coordinates   866859..869222 (+) Length   787 a.a.
NCBI ID   WP_120068793.1    Uniprot ID   A0A443J4H6
Organism   Siminovitchia fortis strain XLM16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 861859..874222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH23_RS04395 (QNH23_04395) - 863081..863398 (+) 318 WP_120068803.1 post-transcriptional regulator -
  QNH23_RS04400 (QNH23_04400) secDF 863473..865740 (+) 2268 WP_120068800.1 protein translocase subunit SecDF -
  QNH23_RS04405 (QNH23_04405) - 865843..866760 (+) 918 WP_120068796.1 cation diffusion facilitator family transporter -
  QNH23_RS04410 (QNH23_04410) recJ 866859..869222 (+) 2364 WP_120068793.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH23_RS04415 (QNH23_04415) - 869213..869725 (+) 513 WP_120068790.1 adenine phosphoribosyltransferase -
  QNH23_RS04420 (QNH23_04420) - 869898..872087 (+) 2190 WP_120068787.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH23_RS04425 (QNH23_04425) dtd 872102..872551 (+) 450 WP_120068784.1 D-aminoacyl-tRNA deacylase -
  QNH23_RS04430 (QNH23_04430) - 872594..873859 (-) 1266 WP_120068781.1 N-acetylmuramoyl-L-alanine amidase -
  QNH23_RS04435 (QNH23_04435) - 873999..874175 (+) 177 WP_164876249.1 hypothetical protein -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88442.96 Da        Isoelectric Point: 5.4147

>NTDB_id=836531 QNH23_RS04410 WP_120068793.1 866859..869222(+) (recJ) [Siminovitchia fortis strain XLM16]
MLQPNTRWIVRKTDEKAVQILTDELDISPLTATLLVNRGISDPAEAYRFLHIEKEDFHDPFLLQDMKKAVERIRQAIKEQ
EKILVYGDYDADGVTSTAVLMTALRELGAPAEFYIPNRFTEGYGPNENAFRRAADNGVKLIITVDTGIASVHEAEVAKQL
GLDLIITDHHEIRPEIPPAYAIIHPRFGGTHYPFPDLAGVGVTFKLAHALYGTAPEQLLDLVAVGTIADLVPLHGENRLI
VKKGLRVLSRSERPGLVALSKLAGVNLAEANEETVGFTIGPRLNAAGRLYSADPAAELLLSKDDRTAEMLARDIEQLNSE
RKDIVAEITKEAVEMVETLYPPSENHVLVIGKEGWNPGVIGIVASRLTEKFYRPAIVLGYDKETGKAKGSARSIKGFDLF
ANLLSCSDLLEHFGGHPMAAGMTLSISNVEELRSRLNVAARDQLSEKDLVPFTDLDAEASLSEVDIHSIKELDMLAPYGV
GNPKPKFMISGADPQDIRKIGTDQNHLKLTLKQAGGLLDGIGFNLGYLADSISPDAQLSVIGELAINEWNNMRKPQIFIR
DASISNWQLFDMRGKRRPDSWLPLLPKKNVYFIVFRRQTLDEFSLDASQVKFISDYEAAKELAIDGKSVVFLDIPPNLSL
LENLIEGKAPDRIYAHFSHDQGQFFRTIPTREHFKWYYAFLAKRRTFDVRKYGKELETYRGWSEETVRFMTKVFFELEFV
TIKDGMIVLNQVKMKKDLSDSPAYQQKQADIELENALIYSSYQELRQWFEKRVAHSGYHEEEVDAWT

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=836531 QNH23_RS04410 WP_120068793.1 866859..869222(+) (recJ) [Siminovitchia fortis strain XLM16]
ATGTTACAGCCAAATACCCGCTGGATCGTTCGGAAAACCGATGAGAAAGCGGTTCAAATACTAACTGATGAACTTGATAT
ATCTCCGCTGACAGCCACATTGCTTGTGAACAGGGGGATTAGCGATCCTGCTGAAGCTTATCGATTTTTACATATTGAAA
AAGAAGACTTTCATGATCCGTTTTTGCTGCAAGACATGAAAAAAGCGGTTGAGCGGATCCGTCAGGCAATCAAGGAACAG
GAGAAAATTCTTGTATACGGCGATTATGATGCCGACGGTGTAACGAGCACCGCCGTCTTAATGACAGCATTAAGGGAATT
GGGGGCTCCAGCCGAGTTTTACATACCGAATCGTTTTACAGAAGGATATGGCCCGAATGAAAATGCTTTTCGCCGGGCCG
CCGATAATGGCGTCAAGCTGATTATAACCGTTGATACCGGTATAGCATCTGTCCATGAGGCAGAAGTCGCAAAACAGCTT
GGATTGGATTTGATTATAACGGATCACCATGAGATCAGGCCTGAAATACCGCCGGCATATGCCATCATACATCCAAGGTT
TGGCGGCACACATTATCCGTTTCCCGATCTTGCGGGAGTCGGTGTCACTTTCAAGCTTGCCCATGCCCTATACGGGACTG
CGCCGGAACAGCTGCTCGACCTCGTCGCTGTCGGAACGATTGCCGACCTGGTACCGCTGCATGGGGAGAACCGGCTCATT
GTCAAAAAAGGCCTTCGGGTCCTCAGCCGTTCGGAGCGCCCCGGACTTGTTGCATTGAGCAAGCTGGCCGGGGTAAATCT
TGCTGAAGCCAATGAAGAAACCGTCGGTTTCACAATCGGCCCCCGCCTGAATGCGGCGGGCAGGCTGTATTCTGCAGACC
CTGCCGCCGAACTCTTGCTGTCAAAAGATGATCGGACGGCAGAAATGCTGGCCCGCGATATTGAACAATTAAACAGCGAG
AGAAAAGACATCGTTGCGGAAATAACAAAAGAAGCCGTAGAAATGGTGGAAACACTTTACCCCCCTTCCGAAAATCACGT
GCTTGTCATCGGAAAAGAAGGATGGAATCCAGGGGTGATCGGCATCGTGGCTTCAAGGCTTACTGAAAAGTTCTACAGGC
CGGCCATCGTCTTGGGCTATGACAAGGAGACGGGAAAGGCCAAGGGCTCTGCACGAAGCATCAAAGGCTTTGATTTGTTT
GCCAATCTGCTGTCCTGCTCTGATTTGCTTGAGCATTTCGGCGGGCATCCGATGGCGGCGGGAATGACTCTCTCAATCTC
CAATGTGGAAGAGCTTCGAAGCAGATTGAATGTTGCGGCAAGAGATCAGCTGAGTGAGAAGGATTTGGTTCCATTCACGG
ATCTTGATGCGGAAGCTTCATTATCTGAAGTGGATATACACTCAATAAAAGAACTGGACATGCTTGCACCATACGGGGTG
GGCAATCCGAAACCGAAATTTATGATCAGCGGCGCAGACCCGCAGGATATTAGAAAAATCGGGACTGATCAAAATCACCT
GAAGCTGACTTTAAAGCAGGCCGGCGGCTTGCTGGATGGAATCGGCTTTAATCTCGGATATCTTGCAGACAGCATCTCAC
CTGACGCACAGCTGTCAGTCATCGGAGAACTGGCAATCAATGAATGGAATAATATGAGGAAACCGCAAATATTTATAAGA
GATGCCAGTATCAGCAACTGGCAGCTGTTTGACATGCGCGGCAAAAGGCGCCCTGATAGCTGGCTTCCCCTTTTACCGAA
AAAGAACGTGTATTTCATCGTTTTTAGACGGCAAACGTTGGATGAGTTTTCGCTGGATGCCTCACAAGTTAAATTCATTT
CTGATTACGAAGCGGCCAAAGAACTGGCCATTGATGGAAAAAGTGTTGTGTTTCTTGATATCCCTCCTAATCTAAGTCTT
CTTGAAAATTTGATAGAAGGGAAGGCGCCAGATCGGATATATGCTCATTTTTCCCATGATCAGGGGCAATTTTTTAGAAC
GATCCCGACTAGGGAGCATTTTAAATGGTACTATGCTTTCCTTGCGAAAAGGCGGACCTTTGATGTAAGAAAGTACGGAA
AAGAGCTTGAAACCTATCGCGGTTGGTCAGAAGAAACCGTCCGGTTTATGACCAAAGTGTTTTTTGAGCTGGAATTTGTT
ACAATAAAAGATGGAATGATCGTACTTAACCAGGTGAAAATGAAGAAAGATTTGTCGGATTCCCCTGCCTATCAACAGAA
GCAGGCGGACATTGAACTTGAAAATGCTCTGATCTATTCATCATATCAGGAATTGAGGCAATGGTTTGAGAAGCGGGTTG
CACACTCTGGTTATCATGAGGAGGAAGTGGATGCATGGACTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(456-561)

DHHA1 domain (DHHA1)

(315-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A443J4H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.523

98.221

0.516