Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH37_RS19370 Genome accession   NZ_CP126112
Coordinates   4046059..4048434 (-) Length   791 a.a.
NCBI ID   WP_283897635.1    Uniprot ID   -
Organism   Peribacillus simplex strain WH6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4041059..4053434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH37_RS19355 (QNH37_19355) dtd 4042579..4043022 (-) 444 WP_283897629.1 D-aminoacyl-tRNA deacylase -
  QNH37_RS19360 (QNH37_19360) - 4043038..4045236 (-) 2199 WP_283897631.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH37_RS19365 (QNH37_19365) - 4045556..4046068 (-) 513 WP_061464220.1 adenine phosphoribosyltransferase -
  QNH37_RS19370 (QNH37_19370) recJ 4046059..4048434 (-) 2376 WP_283897635.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH37_RS19375 (QNH37_19375) secDF 4048581..4050842 (-) 2262 WP_283897637.1 protein translocase subunit SecDF -
  QNH37_RS19380 (QNH37_19380) - 4051040..4051345 (-) 306 WP_179890971.1 post-transcriptional regulator -
  QNH37_RS19385 (QNH37_19385) spoVB 4051515..4053077 (+) 1563 WP_283897641.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89124.62 Da        Isoelectric Point: 4.8587

>NTDB_id=836496 QNH37_RS19370 WP_283897635.1 4046059..4048434(-) (recJ) [Peribacillus simplex strain WH6]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIREAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVDEAKLAGEL
GMDYILTDHHEPGPELPEALAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSTNLEEATELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSFDREKGLAKGSARSIAGFDLF
QSLSACREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEQLNEEDFKPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGENHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVNHWQLFDYRGKGQAEKWLADIPVQNRKIVIFSEDIYRRYPFLQNHPDLVHINNELDAEQLDCFEGHLAFMDMPPS
REFLKRVIANKYPSRIYAHFSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESDSYTRKKEQFELEQELVYSSYQKLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=836496 QNH37_RS19370 WP_283897635.1 4046059..4048434(-) (recJ) [Peribacillus simplex strain WH6]
ATGTTAAAGCCAAAAACCCGGTGGAACTTACGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCATTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAGAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGATGGCGTGACATCGACCACAGTGATGATGACGGCGCTGACGAGATT
GGGGGCCGATGTTGACTTTTATATCCCGAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCAG
CCGAGCAAGGGGTGAAGGTTTTAATAACCGTCGATACCGGAATTTCTGCAGTCGATGAAGCGAAACTTGCCGGCGAGCTC
GGCATGGATTATATTTTGACCGACCACCATGAACCGGGACCGGAACTGCCTGAGGCATTGGCAATCATCCATCCTAAACT
TGAGGACAGTTCCTATCCATTTAAAGAGCTTGCTGGAGTAGGGGTTGCATTTAAGCTGGCACACGCCTTGCTTGGGGAAC
TGCCTGAGGATTTGCTTGAGATAGCGGCAATCGGCACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGTCTGACGCGCCGCCCGGGACTTGTTGCCTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCGATGGCACCGCGGATCAATGCTGTCGGGCGCCTTGGAGATGCCGACC
CAGCTGTGGATTTATTGATGTCCACAAATCTGGAAGAAGCAACGGAACTTGCCAATGAAATCAATGATATCAATAAAGAG
CGGCAGGAAATGGTTGCAGCAATGGCGGAAGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAACGCCGGAGTTGTGGGGATTGTGGCTTCTAAACTTGTTGAACGCTTTTACCGGC
CCACGATTGTATTGAGCTTTGACCGGGAAAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGCCGGTTTCGATCTTTTT
CAAAGTCTTTCCGCCTGCCGTGAAATGCTGCCTCATTTCGGTGGCCATCCGATGGCTGCTGGAATGACATTGAAAATTGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACTTGATTGCGAAGGAACAACTGAACGAAGAGGACTTCAAACCCATTACAA
ACTTGGACGGAGCAACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTGGCGCCATTTGGGGTT
ACGAATCCAAAGCCGAAGATTTTGATAGATTCCGTCCAGCTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTCCAGCTGGAAGATGGTGAAAATCACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTCTCGGTTATTGGTGAGCTTTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTAAACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGTACAAAACCGGAAAATCGTCATTTTCTCGGAAGATATTTATCGCAGATACCCATTTTTGCAAAACCATCCAGATCTTG
TTCATATCAATAATGAACTGGATGCAGAGCAGCTCGACTGCTTCGAAGGTCATTTGGCATTTATGGACATGCCGCCGTCC
AGGGAATTTTTGAAACGGGTGATTGCCAATAAGTACCCTTCGCGTATCTACGCTCACTTTTCCCATGAACAAGACCATTT
CTTAAGTACGATGCCAACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAAAAGGGTCCGCTCGACGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACCGTGGATTTCATTTCAAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGATTCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGAAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

RecJ OB domain (RecJ_OB)

(456-562)

DHHA1 domain (DHHA1)

(310-437)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.729

100

0.549