Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH37_RS18995 Genome accession   NZ_CP126112
Coordinates   3956779..3959184 (-) Length   801 a.a.
NCBI ID   WP_283897536.1    Uniprot ID   -
Organism   Peribacillus simplex strain WH6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3951779..3964184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH37_RS18970 (QNH37_18970) - 3953008..3954084 (-) 1077 WP_283897530.1 AI-2E family transporter -
  QNH37_RS18975 (QNH37_18975) - 3954313..3954528 (-) 216 WP_063233024.1 hypothetical protein -
  QNH37_RS18980 (QNH37_18980) - 3954518..3954976 (-) 459 WP_283897532.1 PRC-barrel domain-containing protein -
  QNH37_RS18985 (QNH37_18985) - 3955349..3956122 (-) 774 WP_283897534.1 TPM domain-containing protein -
  QNH37_RS18990 (QNH37_18990) - 3956122..3956688 (-) 567 WP_048681258.1 LemA family protein -
  QNH37_RS18995 (QNH37_18995) recD2 3956779..3959184 (-) 2406 WP_283897536.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH37_RS19000 (QNH37_19000) - 3959221..3959886 (-) 666 WP_230301251.1 tetratricopeptide repeat protein -
  QNH37_RS19005 (QNH37_19005) mnmA 3960009..3961124 (-) 1116 WP_063232954.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH37_RS19010 (QNH37_19010) - 3961154..3962299 (-) 1146 WP_283897539.1 cysteine desulfurase family protein -
  QNH37_RS19015 (QNH37_19015) - 3962360..3962779 (-) 420 WP_076365115.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90565.30 Da        Isoelectric Point: 4.7950

>NTDB_id=836494 QNH37_RS18995 WP_283897536.1 3956779..3959184(-) (recD2) [Peribacillus simplex strain WH6]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQYHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTGQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYVKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLQEILSEEEMPVEKGEEHQQSSYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=836494 QNH37_RS18995 WP_283897536.1 3956779..3959184(-) (recD2) [Peribacillus simplex strain WH6]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAACATGTACTCGGTTGTAAGAATTCGCGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATTTATATTTTTTATGGGGCTATGAAGGAACATCCGCGTTTTGGC
CTTCAATACCATGTAGAGCATTTTCGCAAGGATCTGCCTCAATCCAAGGAAGGAATCGTCAGTTATTTATCGGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCTGAAAGCATTGTTGAGACACTGGGTGAAAAGGCAATTTCAAAAATTCTGGCTC
AGCCTTCGCTACTTGATGATATCCCGAAGCTATCCGGGGAAAAGGCAAAAGGTCTCTATGATACATTGGTCGAGCATCAA
GGTCTGGAGCAGGTGATGATTGCCTTGAATCAATATGGCTTCGGTCCACAGCTGTCGATGAAGATATATCAAATGTATAA
GCAGGATACGATCACCATGGTTCAGGGAAATCCGTATAAGCTCGTTGAGGATATTGAAGGGATTGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCATCCCGATCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCA
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTATTGGAGGCCGTCAAACGTTTGCTGGAGGAAAATAA
ACGTGATCGGATTGAGTTCACGAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTTTTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGAGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCGGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTATCATATGCCCC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCCATGTTAATCTTGACGGGCGGACCTGGTACAGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATACGCGGAGCTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCATTTCCATTCGTACTTGCTGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAGTCGACTGGACTCCCTGC
TGTTACGATCCATCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTAATCATCGATGAGGTTTCCATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTTTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGCTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGTAGGCTTCCGGATGATGTCACGAAACAGCAAGAAGATCGATCGTTCATTCGCTGCCAAACTGGTCAAATTCCCCAA
GTAATCGAGAAGGTGGTTGCAAATGCCAGGACGAAAGGCTTCACGGCCAAGGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCCCTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATACAGAACGGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAT
GGCGATATGGGTGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATCATGTCGATAAAGTAATCATATCGTTCGA
AGGCATCGAAGTGACTTACGTGAAACAGGACTTGAACCAGATTACACATGCCTATTGCTGCTCCATTCATAAGTCACAGG
GAAGCGAATTCCCCATTGTCATTTTACCTGTAGTGAAAAGTTATTATCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTTTGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCAAGAGATTTTGAGTGAAGAAGAAATGCCGGTGGAAAAGGGAGAGGAAC
ATCAACAATCAAGTTATCTTGATATTCTCATGCATGCTGACCCGATGATCGGAATGGAGAATGTCACGCCTTATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-555)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.923

100

0.619