Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH20_RS19630 Genome accession   NZ_CP126110
Coordinates   4006102..4008465 (-) Length   787 a.a.
NCBI ID   WP_283919652.1    Uniprot ID   A0AA95MCI1
Organism   Neobacillus sp. WH10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4001102..4013465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH20_RS19615 (QNH20_19615) dtd 4002732..4003175 (-) 444 WP_283919649.1 D-aminoacyl-tRNA deacylase -
  QNH20_RS19620 (QNH20_19620) - 4003188..4005383 (-) 2196 WP_283919650.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH20_RS19625 (QNH20_19625) - 4005599..4006111 (-) 513 WP_283919651.1 adenine phosphoribosyltransferase -
  QNH20_RS19630 (QNH20_19630) recJ 4006102..4008465 (-) 2364 WP_283919652.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH20_RS19635 (QNH20_19635) secDF 4008632..4010893 (-) 2262 WP_283919653.1 protein translocase subunit SecDF -
  QNH20_RS19640 (QNH20_19640) - 4011024..4011320 (-) 297 WP_283919654.1 post-transcriptional regulator -
  QNH20_RS19645 (QNH20_19645) spoVB 4011461..4013011 (+) 1551 WP_283919655.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88364.19 Da        Isoelectric Point: 4.8619

>NTDB_id=836451 QNH20_RS19630 WP_283919652.1 4006102..4008465(-) (recJ) [Neobacillus sp. WH10]
MLKSKTRWVVRSSDNNLVNMLANELKITPLVASLLVNRGLDTVDSARYFLFGKDEFHDPYLLKGMDIAVKRIHDAIERQE
PILIFGDYDADGVSSTSVLMITLRDLGANVQFYIPNRFTEGYGPNEPAFRQAAENGINLIITVDTGISAVHEAAVAKELG
IDLIITDHHEPGPVLPEALAIIHPKLPDSIYPFRELAGVGVAFKLAHALYGEIPEHLFEIAVIGTVADLVSLKGENRLIA
KKGLEKLKLTQNLGLKAILKLAGVDPMTINEETIGFTLAPRINAVGRLEDADLAVQLILTDDPEEAQQLAEEMDVLNKTR
QAIVNTITDEAIEEVEKNYPIETNKVLVVGKEGWNAGVIGIVASRLVEKYYRPTIVLNFDPDKDVAKGSARSIAGFDLFK
NLSTCRDILPHFGGHPMAAGMTLQLEDVAGLRTRLNMLAEEQLTAEDFIPVTYLDEEIHLEDINLSSLEEMNLLSPFGMD
NPKPKVLINNVEVASMRKIGSQQNHLKVLVNEGGANLDGVGFGLGALADQISPASKISLIGELSINEWNNIRKPQIFIHD
IKVESWQLFDYRGQKRINSMANTVPTENRKLIIFNKEHLEKINDDLKAETIFIRDIEEARAFDCNKANIVLVDFPPSIEI
LKVLLEGRQPSRIYAYFYKESSDFFSTVPTRDHFKWYYAYLLKKGPVDLKRHGDVIAKYRGWSQETIIFMSKVFSELDFV
TINNGFITLNNQAQKRDLTDSRTYQTKQAQYALERDILFSSFQELKGWFDQVIQESVKTEEAIEEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=836451 QNH20_RS19630 WP_283919652.1 4006102..4008465(-) (recJ) [Neobacillus sp. WH10]
ATGTTAAAGTCAAAAACAAGATGGGTTGTTCGCAGTTCTGATAACAATCTAGTAAATATGCTAGCAAATGAATTGAAAAT
AACACCTCTAGTTGCGTCACTGCTTGTTAATCGTGGCTTAGATACCGTAGATTCTGCACGGTATTTTTTATTTGGGAAGG
ATGAGTTCCATGATCCATATCTTTTAAAAGGGATGGATATTGCGGTTAAGAGAATACATGATGCCATCGAAAGGCAAGAA
CCGATTCTTATTTTTGGTGATTATGACGCTGATGGCGTAAGCAGTACATCGGTATTAATGATCACACTTCGTGATCTAGG
TGCTAATGTCCAATTTTACATCCCGAATCGCTTTACTGAAGGTTATGGACCGAATGAACCAGCATTTCGTCAGGCGGCGG
AAAATGGAATAAACTTGATTATTACCGTGGATACTGGAATATCAGCTGTTCATGAAGCAGCCGTTGCGAAAGAACTGGGA
ATTGACCTAATCATTACCGATCATCATGAGCCTGGACCAGTCTTACCTGAAGCACTAGCGATTATTCACCCAAAGCTTCC
TGATAGTATTTATCCGTTTCGGGAGCTTGCAGGTGTAGGCGTCGCTTTTAAACTCGCTCATGCCCTCTATGGAGAAATTC
CTGAGCATTTGTTTGAAATAGCCGTTATTGGGACAGTAGCAGACTTAGTATCATTAAAAGGCGAAAATCGCCTGATAGCC
AAAAAAGGTCTAGAAAAACTGAAATTGACGCAAAATTTAGGTCTTAAAGCTATTCTAAAATTGGCTGGGGTCGACCCTAT
GACAATCAATGAAGAAACAATTGGTTTTACACTTGCACCGAGAATTAATGCTGTCGGAAGGTTAGAAGATGCTGATTTAG
CTGTTCAGCTGATCCTGACAGATGACCCTGAAGAAGCGCAACAATTAGCAGAAGAGATGGATGTCTTAAATAAGACAAGA
CAAGCGATTGTCAATACGATTACAGACGAGGCAATCGAAGAGGTAGAAAAGAATTATCCAATAGAGACAAATAAGGTTCT
TGTCGTCGGCAAGGAAGGCTGGAATGCTGGTGTTATTGGGATTGTCGCCTCGAGGCTTGTTGAAAAATACTACCGGCCGA
CAATAGTGTTAAATTTTGACCCAGATAAAGATGTAGCAAAGGGCTCTGCCCGGAGTATTGCAGGATTTGATTTATTTAAA
AATTTATCAACTTGCCGGGATATACTCCCTCACTTTGGCGGACATCCAATGGCTGCAGGAATGACCTTACAGCTTGAAGA
TGTTGCCGGGCTTCGGACAAGATTAAATATGCTCGCTGAAGAGCAGTTAACTGCAGAGGATTTTATCCCTGTTACCTATC
TTGACGAAGAAATCCATCTCGAAGATATTAATTTATCCTCGTTAGAAGAAATGAATTTGCTTTCTCCGTTTGGCATGGAC
AACCCGAAGCCCAAAGTTTTAATAAATAACGTTGAAGTTGCCAGTATGAGAAAGATTGGCAGTCAGCAAAACCATCTAAA
GGTTCTAGTGAATGAAGGCGGTGCGAATCTTGATGGAGTAGGCTTTGGATTAGGTGCTTTAGCTGACCAAATTTCACCTG
CATCAAAAATTTCATTAATAGGGGAATTATCTATTAATGAATGGAACAATATTCGTAAGCCACAAATTTTTATCCACGAT
ATCAAGGTTGAATCATGGCAGTTATTTGACTATCGCGGACAAAAGCGAATCAACAGCATGGCAAACACTGTACCTACTGA
AAACAGGAAACTCATTATTTTTAATAAAGAACATCTTGAAAAAATAAACGACGATTTGAAGGCTGAGACGATTTTCATTC
GAGATATCGAAGAGGCAAGAGCATTTGATTGTAATAAGGCAAATATCGTCTTAGTCGATTTTCCGCCATCTATAGAGATA
CTAAAAGTTTTATTAGAAGGAAGACAGCCCTCAAGGATTTATGCTTATTTTTATAAAGAATCCAGTGACTTTTTTAGTAC
GGTTCCGACTCGTGATCATTTTAAATGGTACTATGCCTATCTTTTGAAAAAAGGTCCGGTTGACCTTAAGCGTCATGGAG
ACGTTATTGCAAAGTATCGCGGCTGGTCGCAGGAAACGATTATCTTTATGTCAAAGGTGTTTTCTGAACTAGATTTTGTT
ACAATAAACAATGGATTTATTACTTTGAATAATCAAGCGCAAAAGCGTGATTTAACTGACTCAAGAACCTATCAAACTAA
ACAGGCACAATATGCACTTGAAAGGGATATATTGTTCTCGTCCTTTCAGGAATTAAAAGGCTGGTTCGATCAAGTCATTC
AAGAGTCGGTTAAAACTGAGGAGGCAATTGAAGAATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(316-435)

RecJ OB domain (RecJ_OB)

(455-560)

DHH family (DHH)

(82-225)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.74

99.619

0.555