Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH15_RS16780 Genome accession   NZ_CP126109
Coordinates   3182073..3184412 (-) Length   779 a.a.
NCBI ID   WP_283889405.1    Uniprot ID   -
Organism   Fictibacillus enclensis strain TL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3177073..3189412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH15_RS16760 (QNH15_16760) - 3178510..3178683 (-) 174 WP_061972646.1 hypothetical protein -
  QNH15_RS16765 (QNH15_16765) dtd 3178742..3179185 (-) 444 WP_283889402.1 D-aminoacyl-tRNA deacylase -
  QNH15_RS16770 (QNH15_16770) - 3179205..3181385 (-) 2181 WP_283889403.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH15_RS16775 (QNH15_16775) - 3181540..3182052 (-) 513 WP_283889404.1 adenine phosphoribosyltransferase -
  QNH15_RS16780 (QNH15_16780) recJ 3182073..3184412 (-) 2340 WP_283889405.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH15_RS16785 (QNH15_16785) secDF 3184490..3186686 (-) 2197 Protein_3257 protein translocase subunit SecDF -
  QNH15_RS16790 (QNH15_16790) - 3186882..3187133 (-) 252 WP_283889406.1 post-transcriptional regulator -
  QNH15_RS16795 (QNH15_16795) spoVB 3187267..3188817 (+) 1551 WP_283889407.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 87494.93 Da        Isoelectric Point: 5.1204

>NTDB_id=836405 QNH15_RS16780 WP_283889405.1 3182073..3184412(-) (recJ) [Fictibacillus enclensis strain TL11]
MLQARTRWNLLPVPEEQASALSSALKIPELVAKLLVSRGMETVESAERFLYSGPQAFYDPFMLDGMNETVNRIKTAIEQN
EKILIFGDYDADGVSSTSVMVYTLKALGADFEFYIPNRFTEGYGPNEPALRWAREQGFTLVITVDTGISAVHEAQVAKEI
GLDFIVTDHHEPPPVLPGAYSIVNPKKPGCPYPFKGLAGVGVAFKVSHALLGEAPLHLLDIACIGTIADLVPLVDENRII
AREGIKALERTTKKGLRALLEVAGLKDTVLNAEHVGFAIGPRVNAAGRLDSAVPAVELFTTEDEEAAKMLASEIDQLNKT
RQSIVSEITKEAVEEVEQNFPPEDNAVLVIAKEGWNPGVIGIVASRLVEKFYRPTIVLSIDSEKGLAKGSARSIEGFDMF
ENLSLSRDILPHFGGHPMAAGMTLAASDLDELRSRLNRQGREQLTEEDFKPVTAIDLECSLDEVTIETIEQMNKLAPFGV
NNPTPRVLIPDVNISEIKKIGSQSNHLKIQFSDGKHKLDAIGFHKGELMDELSYHSPVSAVGELSINEWNGYRKPQLMLS
DLAVREWQLFDLRGIRDAQKKLFSLPESKVLIIAFEEETMKHPAFSELQERIYLYPQQKDQMNFAGKYVVFLDVPKTREE
FFYLLESNPEPERTYVIFHQENDQFFSSVPTREQFRWFYAFLTKRKLFDAARHGEELARLKGWSKEAVPFMSKVFFELDF
VTIENGVITIKDRPEKKDLKHSTTYRNKLEQAAIENQLVFSSYQELKNCFHQSRKAPQA

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=836405 QNH15_RS16780 WP_283889405.1 3182073..3184412(-) (recJ) [Fictibacillus enclensis strain TL11]
ATGTTACAGGCAAGAACGCGCTGGAACCTCCTGCCCGTTCCGGAAGAGCAGGCTTCTGCCTTATCTTCTGCATTAAAAAT
ACCGGAACTGGTGGCAAAGCTGCTGGTTTCAAGAGGGATGGAGACCGTTGAAAGTGCAGAGCGCTTTTTATACAGCGGCC
CGCAAGCATTTTATGATCCATTCATGCTGGATGGAATGAATGAAACAGTAAACAGGATTAAAACGGCCATAGAGCAAAAT
GAAAAGATTTTGATCTTTGGTGATTATGATGCGGATGGTGTCAGCAGCACATCTGTAATGGTATATACATTAAAGGCTTT
GGGAGCCGATTTTGAATTTTACATACCGAACCGTTTTACAGAAGGATACGGACCGAATGAGCCTGCCCTCAGATGGGCGA
GGGAGCAAGGTTTTACCCTTGTCATTACAGTGGATACAGGAATTTCGGCTGTTCACGAAGCGCAGGTCGCTAAAGAGATT
GGTCTTGATTTTATCGTAACGGATCATCATGAACCGCCTCCTGTTCTTCCGGGTGCATACAGTATTGTTAATCCTAAAAA
ACCGGGCTGCCCATACCCGTTTAAAGGTTTGGCAGGCGTCGGCGTGGCATTTAAGGTTTCCCATGCACTTCTTGGAGAAG
CCCCGCTGCACCTGCTTGACATCGCCTGTATTGGCACAATTGCCGATCTGGTGCCATTAGTGGACGAGAACCGGATTATT
GCCAGGGAAGGCATTAAAGCACTGGAGAGAACCACCAAAAAAGGATTAAGAGCGCTTCTTGAAGTGGCCGGATTAAAGGA
TACGGTTTTAAACGCAGAACATGTCGGTTTTGCGATCGGGCCGAGGGTAAATGCCGCCGGCCGGCTGGATTCCGCTGTTC
CTGCAGTTGAGCTTTTTACAACAGAGGACGAAGAAGCGGCAAAGATGCTCGCATCAGAAATCGATCAATTAAACAAAACC
CGCCAGTCGATCGTTTCCGAAATTACGAAAGAAGCTGTTGAGGAAGTGGAACAGAACTTCCCTCCGGAGGATAATGCGGT
TCTTGTGATCGCTAAAGAAGGCTGGAACCCGGGAGTCATCGGCATCGTGGCTTCACGTTTAGTGGAGAAATTTTATCGTC
CGACGATCGTGCTAAGCATTGATTCGGAAAAAGGCCTCGCCAAAGGATCAGCAAGGAGCATTGAGGGCTTTGATATGTTC
GAGAATCTGTCACTGAGCCGGGATATCCTTCCTCATTTTGGAGGGCATCCAATGGCGGCTGGTATGACGCTTGCAGCAAG
TGATCTGGACGAATTGAGAAGCCGACTGAACCGCCAGGGCCGGGAGCAGCTGACAGAAGAAGATTTTAAACCGGTGACTG
CCATTGATCTTGAATGTTCTCTGGATGAAGTTACCATTGAAACGATTGAGCAGATGAACAAGCTTGCGCCGTTTGGGGTC
AATAATCCGACACCGCGGGTCTTGATTCCCGATGTGAACATCAGTGAAATCAAAAAGATTGGCAGCCAGTCCAATCACCT
GAAAATCCAATTCTCAGATGGGAAGCATAAGCTTGATGCCATCGGATTTCACAAAGGTGAATTGATGGATGAGCTGAGCT
ATCATTCTCCGGTATCAGCTGTCGGAGAACTGTCCATTAATGAGTGGAACGGTTACCGAAAACCGCAGCTGATGCTCAGT
GATCTTGCTGTGAGGGAATGGCAGCTGTTCGATCTCAGAGGAATAAGAGATGCACAAAAAAAATTGTTCTCTCTTCCCGA
AAGCAAAGTGCTGATTATTGCGTTTGAAGAAGAGACGATGAAACACCCGGCGTTTTCGGAGCTTCAGGAGAGGATTTATC
TTTATCCCCAACAAAAGGATCAAATGAATTTTGCCGGTAAATATGTTGTTTTTCTTGATGTGCCAAAAACAAGAGAAGAA
TTTTTTTATCTTCTTGAAAGCAATCCGGAGCCTGAACGAACCTATGTTATTTTTCATCAGGAAAATGACCAGTTCTTTTC
ATCTGTTCCGACGAGAGAGCAGTTCCGCTGGTTTTATGCCTTTTTAACGAAACGGAAGTTATTTGATGCCGCGCGACACG
GGGAAGAGCTGGCCAGGCTCAAGGGATGGTCAAAAGAAGCCGTGCCTTTTATGTCAAAAGTGTTTTTTGAGCTGGACTTT
GTTACAATAGAAAATGGTGTTATTACGATCAAGGATCGGCCTGAGAAAAAAGACTTGAAGCATTCAACTACATATAGGAA
TAAACTGGAGCAGGCTGCAATTGAAAACCAGCTCGTCTTTTCTTCCTATCAGGAATTGAAAAACTGCTTCCATCAGTCAA
GGAAAGCCCCTCAGGCATAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHHA1 domain (DHHA1)

(315-438)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.956

99.872

0.529